Gene annotation
Transcriptome id Sobic.002G142000.1
Synonym Sb02g013060
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1W0W3Z9
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G19184 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os01g13300.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G246950 - -
2 Sobic.005G161000 expressed protein -
3 Sobic.010G258600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.003G336400 pentatricopeptide, putative, expressed -
5 Sobic.001G278400 expressed protein -
6 Sobic.001G484500 - -
7 Sobic.002G285950 - -
8 Sobic.003G309500 PTAC12(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PTAC12, putative, expressed -
9 Sobic.003G398900 tetratricopeptide-like helical, putative, expressed -
10 Sobic.001G508700 expressed protein -
11 Sobic.002G149550 - K03879: NADH-ubiquinone oxidoreductase chain 2
12 Sobic.001G378150 - -
13 Sobic.002G264700 RNA recognition motif containing protein, putative, expressed -
14 Sobic.004G326100 inactive receptor kinase At1g27190 precursor, putative, expressed -
15 Sobic.003G303800 tesmin/TSO1-like CXC domain containing protein, expressed -
16 Sobic.001G177200 frigida, putative, expressed -
17 Sobic.002G411700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.005G143000 expressed protein -
19 Sobic.002G060750 - -
20 Sobic.002G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic002G142000 Sobic002G142000 Sobic002G246950 Sobic002G246950 Sobic002G142000--Sobic002G246950 Sobic005G161000 Sobic005G161000 Sobic002G142000--Sobic005G161000 Sobic010G258600 Sobic010G258600 Sobic002G142000--Sobic010G258600 Sobic003G336400 Sobic003G336400 Sobic002G142000--Sobic003G336400 Sobic001G278400 Sobic001G278400 Sobic002G142000--Sobic001G278400 Sobic001G484500 Sobic001G484500 Sobic002G142000--Sobic001G484500 Sobic002G285950 Sobic002G285950 Sobic002G142000--Sobic002G285950 Sobic003G309500 Sobic003G309500 Sobic002G142000--Sobic003G309500 Sobic003G398900 Sobic003G398900 Sobic002G142000--Sobic003G398900 Sobic002G060750 Sobic002G060750 Sobic002G246950--Sobic002G060750 Sobic002G246950--Sobic003G398900 Sobic003G018400 Sobic003G018400 Sobic002G246950--Sobic003G018400 Sobic003G303800 Sobic003G303800 Sobic002G246950--Sobic003G303800 Sobic001G378150 Sobic001G378150 Sobic002G246950--Sobic001G378150 Sobic002G411700 Sobic002G411700 Sobic002G246950--Sobic002G411700 Sobic002G246950--Sobic002G285950 Sobic002G149550 Sobic002G149550 Sobic002G246950--Sobic002G149550 Sobic007G094000 Sobic007G094000 Sobic002G246950--Sobic007G094000 Sobic005G161000--Sobic003G398900 Sobic005G161000--Sobic001G484500 Sobic005G161000--Sobic003G336400 Sobic006G247400 Sobic006G247400 Sobic005G161000--Sobic006G247400 Sobic005G161000--Sobic010G258600 Sobic005G161000--Sobic002G246950 Sobic007G084400 Sobic007G084400 Sobic005G161000--Sobic007G084400 Sobic009G160300 Sobic009G160300 Sobic005G161000--Sobic009G160300 Sobic005G161000--Sobic002G411700 Sobic010G258600--Sobic003G336400 Sobic005G008301 Sobic005G008301 Sobic010G258600--Sobic005G008301 Sobic002G171200 Sobic002G171200 Sobic010G258600--Sobic002G171200 Sobic001G177200 Sobic001G177200 Sobic010G258600--Sobic001G177200 Sobic010G069000 Sobic010G069000 Sobic010G258600--Sobic010G069000 Sobic002G264700 Sobic002G264700 Sobic010G258600--Sobic002G264700 Sobic010G258600--Sobic005G161000 Sobic010G258600--Sobic003G398900 Sobic010G258600--Sobic001G378150 Sobic003G336400--Sobic010G258600 Sobic006G116600 Sobic006G116600 Sobic003G336400--Sobic006G116600 Sobic003G336400--Sobic001G378150 Sobic003G336400--Sobic003G398900 Sobic003G336400--Sobic001G177200 Sobic003G013400 Sobic003G013400 Sobic003G336400--Sobic003G013400 Sobic003G336400--Sobic002G149550 Sobic009G221701 Sobic009G221701 Sobic003G336400--Sobic009G221701 Sobic002G429200 Sobic002G429200 Sobic003G336400--Sobic002G429200 Sobic004G060000 Sobic004G060000 Sobic001G278400--Sobic004G060000 Sobic001G406200 Sobic001G406200 Sobic001G278400--Sobic001G406200 Sobic001G283800 Sobic001G283800 Sobic001G278400--Sobic001G283800 Sobic003G267600 Sobic003G267600 Sobic001G278400--Sobic003G267600 Sobic001G378900 Sobic001G378900 Sobic001G278400--Sobic001G378900 Sobic008G132550 Sobic008G132550 Sobic001G278400--Sobic008G132550 Sobic001G278400--Sobic002G246950 Sobic006G128150 Sobic006G128150 Sobic001G278400--Sobic006G128150 Sobic003G253100 Sobic003G253100 Sobic001G278400--Sobic003G253100 Sobic001G484500--Sobic003G398900 Sobic001G484500--Sobic009G160300 Sobic007G052500 Sobic007G052500 Sobic001G484500--Sobic007G052500 Sobic001G484500--Sobic005G161000 Sobic001G484500--Sobic003G303800 Sobic001G484500--Sobic002G246950 Sobic001G484500--Sobic001G283800 Sobic001G484500--Sobic006G247400 Sobic001G484500--Sobic001G278400 Sobic002G285950--Sobic001G378150 Sobic002G285950--Sobic002G149550 Sobic002G285950--Sobic009G221701 Sobic010G217466 Sobic010G217466 Sobic002G285950--Sobic010G217466 Sobic002G331700 Sobic002G331700 Sobic002G285950--Sobic002G331700 Sobic007G119300 Sobic007G119300 Sobic002G285950--Sobic007G119300 Sobic002G426650 Sobic002G426650 Sobic002G285950--Sobic002G426650 Sobic007G212700 Sobic007G212700 Sobic002G285950--Sobic007G212700 Sobic006G208600 Sobic006G208600 Sobic002G285950--Sobic006G208600 Sobic005G169900 Sobic005G169900 Sobic003G309500--Sobic005G169900 Sobic006G142700 Sobic006G142700 Sobic003G309500--Sobic006G142700 Sobic003G194900 Sobic003G194900 Sobic003G309500--Sobic003G194900 Sobic001G124500 Sobic001G124500 Sobic003G309500--Sobic001G124500 Sobic001G477100 Sobic001G477100 Sobic003G309500--Sobic001G477100 Sobic004G342600 Sobic004G342600 Sobic003G309500--Sobic004G342600 Sobic002G038200 Sobic002G038200 Sobic003G309500--Sobic002G038200 Sobic002G341600 Sobic002G341600 Sobic003G309500--Sobic002G341600 Sobic003G159000 Sobic003G159000 Sobic003G309500--Sobic003G159000 Sobic003G398900--Sobic002G246950 Sobic003G398900--Sobic002G411700 Sobic003G398900--Sobic005G161000 Sobic003G398900--Sobic001G484500 Sobic003G398900--Sobic003G336400 Sobic003G398900--Sobic003G303800 Sobic003G398900--Sobic002G060750 Sobic003G398900--Sobic009G160300 Sobic003G398900--Sobic006G116600
Octagon: transcription factors


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