Gene annotation
Transcriptome id Sobic.002G257500.2,Sobic.002G257500.1
Synonym Sb02g029270, ASY1, ATASY1
Functional annotation HORMA domain containing protein, putative, expressed
UniProt A0A1W0W5R5 , A0A1W0W5S1
Pfam PF02301
Panther DB -
NCBI CDD KOG4652; HORMA domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67370 : DNA-binding HORMA family protein
RAP-DB (Rice) LOC_Os09g32930.1 : retrotransposon protein, putative, SINE subclass, expressed
MaizeGDB (Corn) Zm00025a022544 , Zm00025a039309 , Zm00025a014303
Brachypodium KQJ90926 , PNT64938 , PNT64939 , PNT64934 , PNT64937
Barley -
Wheat TraesCS5B02G285800 , TraesCS5A02G286500 , TraesCS5A02G304300 , TraesCS5D02G294100
Populus PNT52851 , PNT46123


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cDNA sequences
Sobic.002G257500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G162900 dnaJ domain containing protein, expressed -
2 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
4 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.004G220200 expressed protein -
6 Sobic.004G234600 expressed protein -
7 Sobic.007G161600 SET domain containing protein, expressed -
8 Sobic.002G053350 - -
9 Sobic.007G128200 expressed protein -
10 Sobic.001G457600 piwi domain containing protein, expressed -
11 Sobic.003G088600 transcription factor X1, putative, expressed -
12 Sobic.003G207000 expressed protein -
13 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
14 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
15 Sobic.001G137500 ankyrin, putative, expressed -
16 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
17 Sobic.001G171200 expressed protein -
18 Sobic.001G137600 ankyrin, putative, expressed -
19 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -


Gene co-expression network
sample Sobic002G257500 Sobic002G257500 Sobic005G162900 Sobic005G162900 Sobic002G257500--Sobic005G162900 Sobic006G271600 Sobic006G271600 Sobic002G257500--Sobic006G271600 Sobic010G194600 Sobic010G194600 Sobic002G257500--Sobic010G194600 Sobic001G071600 Sobic001G071600 Sobic002G257500--Sobic001G071600 Sobic004G220200 Sobic004G220200 Sobic002G257500--Sobic004G220200 Sobic004G234600 Sobic004G234600 Sobic002G257500--Sobic004G234600 Sobic007G161600 Sobic007G161600 Sobic002G257500--Sobic007G161600 Sobic002G053350 Sobic002G053350 Sobic002G257500--Sobic002G053350 Sobic007G128200 Sobic007G128200 Sobic002G257500--Sobic007G128200 Sobic005G162900--Sobic001G071600 Sobic003G091200 Sobic003G091200 Sobic005G162900--Sobic003G091200 Sobic005G162900--Sobic006G271600 Sobic007G033700 Sobic007G033700 Sobic005G162900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic005G162900--Sobic009G243000 Sobic002G078900 Sobic002G078900 Sobic005G162900--Sobic002G078900 Sobic005G163500 Sobic005G163500 Sobic005G162900--Sobic005G163500 Sobic010G183800 Sobic010G183800 Sobic005G162900--Sobic010G183800 Sobic007G121700 Sobic007G121700 Sobic005G162900--Sobic007G121700 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic009G048300 Sobic009G048300 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G456000 Sobic001G456000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic001G171200 Sobic001G171200 Sobic004G220200--Sobic001G171200 Sobic001G137400 Sobic001G137400 Sobic004G220200--Sobic001G137400 Sobic004G220200--Sobic009G243000 Sobic004G220200--Sobic004G234600 Sobic001G086400 Sobic001G086400 Sobic004G220200--Sobic001G086400 Sobic004G220200--Sobic010G194600 Sobic006G163300 Sobic006G163300 Sobic004G220200--Sobic006G163300 Sobic004G220200--Sobic002G053350 Sobic001G137600 Sobic001G137600 Sobic004G220200--Sobic001G137600 Sobic004G234600--Sobic007G128200 Sobic001G216400 Sobic001G216400 Sobic004G234600--Sobic001G216400 Sobic004G234600--Sobic009G063700 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic004G234600--Sobic010G194600 Sobic001G158100 Sobic001G158100 Sobic004G234600--Sobic001G158100 Sobic004G234600--Sobic010G183800 Sobic008G151600 Sobic008G151600 Sobic007G161600--Sobic008G151600 Sobic005G062600 Sobic005G062600 Sobic007G161600--Sobic005G062600 Sobic007G147200 Sobic007G147200 Sobic007G161600--Sobic007G147200 Sobic001G043500 Sobic001G043500 Sobic007G161600--Sobic001G043500 Sobic003G019900 Sobic003G019900 Sobic007G161600--Sobic003G019900 Sobic010G092400 Sobic010G092400 Sobic007G161600--Sobic010G092400 Sobic007G161600--Sobic006G163300 Sobic003G008800 Sobic003G008800 Sobic007G161600--Sobic003G008800 Sobic007G161600--Sobic003G046400 Sobic002G053350--Sobic004G234600 Sobic002G053350--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic002G053350--Sobic008G137700 Sobic002G053350--Sobic007G128200 Sobic002G053350--Sobic001G216400 Sobic002G053350--Sobic001G419500 Sobic002G053350--Sobic010G194600 Sobic007G193300 Sobic007G193300 Sobic002G053350--Sobic007G193300 Sobic002G053350--Sobic001G137500 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic005G166100 Sobic005G166100 Sobic007G128200--Sobic005G166100 Sobic007G043000 Sobic007G043000 Sobic007G128200--Sobic007G043000
Octagon: transcription factors


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