Gene annotation
Transcriptome id Sobic.002G281400.1
Synonym Sb02g031430
Functional annotation protein of unknown function DUF1279 domain containing protein, expressed
UniProt C5X6X5
Pfam PF06916
Panther DB PTHR21377 PTHR21377:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20940 : Protein of unknown function (DUF1279)
RAP-DB (Rice) LOC_Os09g36982.1 : protein of unknown function DUF1279 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014471 , Zm00025a049302
Brachypodium KQJ91261
Barley HORVU5Hr1G084390.3 , HORVU5Hr1G084390.2 , HORVU5Hr1G084390.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G281400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
2 Sobic.001G286300 - -
3 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
4 Sobic.003G024500 expressed protein -
5 Sobic.004G048700 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
6 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
7 Sobic.009G232500 expressed protein -
8 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
9 Sobic.004G242100 expressed protein -
10 Sobic.006G143500 expressed protein -
11 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
12 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
13 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
14 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
15 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
16 Sobic.009G209001 - -
17 Sobic.003G296800 expressed protein -
18 Sobic.004G259600 slowmo homolog, putative, expressed -
19 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -
20 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3


Gene co-expression network
sample Sobic002G281400 Sobic002G281400 Sobic001G031800 Sobic001G031800 Sobic002G281400--Sobic001G031800 Sobic001G286300 Sobic001G286300 Sobic002G281400--Sobic001G286300 Sobic007G022500 Sobic007G022500 Sobic002G281400--Sobic007G022500 Sobic003G024500 Sobic003G024500 Sobic002G281400--Sobic003G024500 Sobic004G048700 Sobic004G048700 Sobic002G281400--Sobic004G048700 Sobic004G012800 Sobic004G012800 Sobic002G281400--Sobic004G012800 Sobic009G232500 Sobic009G232500 Sobic002G281400--Sobic009G232500 Sobic006G231700 Sobic006G231700 Sobic002G281400--Sobic006G231700 Sobic004G242100 Sobic004G242100 Sobic002G281400--Sobic004G242100 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic002G263100 Sobic002G263100 Sobic001G031800--Sobic002G263100 Sobic003G296800 Sobic003G296800 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic007G013900 Sobic007G013900 Sobic001G031800--Sobic007G013900 Sobic002G309700 Sobic002G309700 Sobic001G031800--Sobic002G309700 Sobic002G246800 Sobic002G246800 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001 Sobic002G296200 Sobic002G296200 Sobic001G286300--Sobic002G296200 Sobic008G094600 Sobic008G094600 Sobic001G286300--Sobic008G094600 Sobic006G013000 Sobic006G013000 Sobic001G286300--Sobic006G013000 Sobic001G128400 Sobic001G128400 Sobic001G286300--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic001G286300--Sobic003G129800 Sobic001G286300--Sobic002G309700 Sobic009G001900 Sobic009G001900 Sobic001G286300--Sobic009G001900 Sobic001G286300--Sobic003G296800 Sobic007G161700 Sobic007G161700 Sobic001G286300--Sobic007G161700 Sobic007G022500--Sobic008G094600 Sobic004G032000 Sobic004G032000 Sobic007G022500--Sobic004G032000 Sobic001G517600 Sobic001G517600 Sobic007G022500--Sobic001G517600 Sobic009G191200 Sobic009G191200 Sobic007G022500--Sobic009G191200 Sobic008G098800 Sobic008G098800 Sobic007G022500--Sobic008G098800 Sobic002G044000 Sobic002G044000 Sobic007G022500--Sobic002G044000 Sobic006G108600 Sobic006G108600 Sobic007G022500--Sobic006G108600 Sobic004G137900 Sobic004G137900 Sobic007G022500--Sobic004G137900 Sobic003G358300 Sobic003G358300 Sobic007G022500--Sobic003G358300 Sobic009G232900 Sobic009G232900 Sobic003G024500--Sobic009G232900 Sobic009G149800 Sobic009G149800 Sobic003G024500--Sobic009G149800 Sobic005G111100 Sobic005G111100 Sobic003G024500--Sobic005G111100 Sobic003G024500--Sobic001G286300 Sobic003G024500--Sobic002G296200 Sobic003G024500--Sobic001G128400 Sobic002G387300 Sobic002G387300 Sobic003G024500--Sobic002G387300 Sobic001G066700 Sobic001G066700 Sobic003G024500--Sobic001G066700 Sobic003G024500--Sobic003G358300 Sobic004G122000 Sobic004G122000 Sobic004G048700--Sobic004G122000 Sobic007G219800 Sobic007G219800 Sobic004G048700--Sobic007G219800 Sobic004G048700--Sobic003G358300 Sobic009G086200 Sobic009G086200 Sobic004G048700--Sobic009G086200 Sobic010G153100 Sobic010G153100 Sobic004G048700--Sobic010G153100 Sobic007G192100 Sobic007G192100 Sobic004G048700--Sobic007G192100 Sobic006G239300 Sobic006G239300 Sobic004G048700--Sobic006G239300 Sobic003G281200 Sobic003G281200 Sobic004G048700--Sobic003G281200 Sobic007G038800 Sobic007G038800 Sobic004G048700--Sobic007G038800 Sobic004G012800--Sobic004G137900 Sobic006G231500 Sobic006G231500 Sobic004G012800--Sobic006G231500 Sobic004G012800--Sobic006G231700 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic004G012800--Sobic005G111100 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic001G532100 Sobic001G532100 Sobic004G012800--Sobic001G532100 Sobic003G410200 Sobic003G410200 Sobic009G232500--Sobic003G410200 Sobic001G107300 Sobic001G107300 Sobic009G232500--Sobic001G107300 Sobic003G109200 Sobic003G109200 Sobic009G232500--Sobic003G109200 Sobic002G374200 Sobic002G374200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic001G478700 Sobic001G478700 Sobic009G232500--Sobic001G478700 Sobic007G010200 Sobic007G010200 Sobic009G232500--Sobic007G010200 Sobic001G239100 Sobic001G239100 Sobic009G232500--Sobic001G239100 Sobic007G031100 Sobic007G031100 Sobic009G232500--Sobic007G031100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic006G231700--Sobic001G128400 Sobic006G231700--Sobic003G129800 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic001G402600 Sobic001G402600 Sobic004G242100--Sobic001G402600 Sobic003G031200 Sobic003G031200 Sobic004G242100--Sobic003G031200 Sobic003G435000 Sobic003G435000 Sobic004G242100--Sobic003G435000 Sobic001G544100 Sobic001G544100 Sobic004G242100--Sobic001G544100 Sobic006G236500 Sobic006G236500 Sobic004G242100--Sobic006G236500 Sobic009G016500 Sobic009G016500 Sobic004G242100--Sobic009G016500 Sobic004G242100--Sobic004G012800 Sobic007G037000 Sobic007G037000 Sobic004G242100--Sobic007G037000 Sobic001G434400 Sobic001G434400 Sobic004G242100--Sobic001G434400
Octagon: transcription factors


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