Gene annotation
Transcriptome id Sobic.002G425300.1
Synonym Sb02g043600, RHA2A
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6QGG4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF175
NCBI CDD -
KEGG Orthology K16282; E3 ubiquitin-protein ligase RHA2
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G15100 : RING-H2 finger A2A
RAP-DB (Rice) LOC_Os07g48680.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Lecithin: cholesterol acyltransferase family protein (At)(PubMedID : 27208977)@lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
2 Sobic.010G273600 CHIT8 - Chitinase family protein precursor, expressed K01183: chitinase
3 Sobic.009G107500 - -
4 Sobic.007G071000 no apical meristem protein, putative, expressed -
5 Sobic.003G264901 - -
6 Sobic.001G511000 peptide transporter PTR3-A, putative, expressed -
7 Sobic.004G291800 - -
8 Sobic.009G082200 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
9 Sobic.001G053900 nodulin, putative, expressed -
10 Sobic.009G138500 "domain confirmed by Pfam database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
11 Sobic.006G026900 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
12 Sobic.009G197200 - -
13 Sobic.008G068400 - -
14 Sobic.007G054100 stress-induced protein, putative, expressed -
15 Sobic.002G220300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.004G088100 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
17 Sobic.004G020401 - -
18 Sobic.001G377000 auxin-repressed protein, putative, expressed -
19 Sobic.005G036700 expressed protein -
20 Sobic.004G096300 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic002G425300 Sobic002G425300 Sobic003G074500 Sobic003G074500 Sobic002G425300--Sobic003G074500 Sobic010G273600 Sobic010G273600 Sobic002G425300--Sobic010G273600 Sobic009G107500 Sobic009G107500 Sobic002G425300--Sobic009G107500 Sobic007G071000 Sobic007G071000 Sobic002G425300--Sobic007G071000 Sobic003G264901 Sobic003G264901 Sobic002G425300--Sobic003G264901 Sobic001G511000 Sobic001G511000 Sobic002G425300--Sobic001G511000 Sobic004G291800 Sobic004G291800 Sobic002G425300--Sobic004G291800 Sobic009G082200 Sobic009G082200 Sobic002G425300--Sobic009G082200 Sobic001G053900 Sobic001G053900 Sobic002G425300--Sobic001G053900 Sobic003G074500--Sobic002G425300 Sobic003G074500--Sobic001G511000 Sobic001G377000 Sobic001G377000 Sobic003G074500--Sobic001G377000 Sobic004G096300 Sobic004G096300 Sobic003G074500--Sobic004G096300 Sobic007G148200 Sobic007G148200 Sobic003G074500--Sobic007G148200 Sobic003G074500--Sobic007G071000 Sobic003G126100 Sobic003G126100 Sobic003G074500--Sobic003G126100 Sobic005G072500 Sobic005G072500 Sobic003G074500--Sobic005G072500 Sobic002G226000 Sobic002G226000 Sobic003G074500--Sobic002G226000 Sobic004G052500 Sobic004G052500 Sobic010G273600--Sobic004G052500 Sobic010G273600--Sobic002G425300 Sobic008G183300 Sobic008G183300 Sobic010G273600--Sobic008G183300 Sobic001G259500 Sobic001G259500 Sobic010G273600--Sobic001G259500 Sobic001G146500 Sobic001G146500 Sobic010G273600--Sobic001G146500 Sobic010G242300 Sobic010G242300 Sobic009G107500--Sobic010G242300 Sobic009G107500--Sobic002G425300 Sobic009G110366 Sobic009G110366 Sobic009G107500--Sobic009G110366 Sobic009G107500--Sobic004G291800 Sobic005G096300 Sobic005G096300 Sobic009G107500--Sobic005G096300 Sobic009G197200 Sobic009G197200 Sobic009G107500--Sobic009G197200 Sobic002G171700 Sobic002G171700 Sobic009G107500--Sobic002G171700 Sobic009G107500--Sobic002G226000 Sobic009G198900 Sobic009G198900 Sobic009G107500--Sobic009G198900 Sobic008G152200 Sobic008G152200 Sobic007G071000--Sobic008G152200 Sobic007G071000--Sobic001G377000 Sobic007G071000--Sobic004G096300 Sobic007G071000--Sobic003G264901 Sobic010G172200 Sobic010G172200 Sobic007G071000--Sobic010G172200 Sobic001G293800 Sobic001G293800 Sobic007G071000--Sobic001G293800 Sobic003G153800 Sobic003G153800 Sobic007G071000--Sobic003G153800 Sobic009G205600 Sobic009G205600 Sobic007G071000--Sobic009G205600 Sobic007G071000--Sobic001G053900 Sobic003G264901--Sobic004G096300 Sobic003G264901--Sobic010G172200 Sobic003G264901--Sobic001G293800 Sobic006G053700 Sobic006G053700 Sobic003G264901--Sobic006G053700 Sobic003G264901--Sobic007G071000 Sobic003G264901--Sobic001G377000 Sobic003G264901--Sobic009G205600 Sobic003G264901--Sobic003G153800 Sobic003G264901--Sobic001G053900 Sobic001G511000--Sobic004G096300 Sobic010G280100 Sobic010G280100 Sobic001G511000--Sobic010G280100 Sobic001G511000--Sobic002G226000 Sobic007G054100 Sobic007G054100 Sobic001G511000--Sobic007G054100 Sobic001G511000--Sobic003G074500 Sobic001G511000--Sobic009G198900 Sobic001G511000--Sobic001G053900 Sobic001G511000--Sobic004G291800 Sobic003G324000 Sobic003G324000 Sobic001G511000--Sobic003G324000 Sobic004G020401 Sobic004G020401 Sobic004G291800--Sobic004G020401 Sobic004G291800--Sobic009G197200 Sobic004G291800--Sobic009G110366 Sobic002G212800 Sobic002G212800 Sobic004G291800--Sobic002G212800 Sobic007G112900 Sobic007G112900 Sobic004G291800--Sobic007G112900 Sobic009G109450 Sobic009G109450 Sobic004G291800--Sobic009G109450 Sobic007G130100 Sobic007G130100 Sobic004G291800--Sobic007G130100 Sobic006G273100 Sobic006G273100 Sobic004G291800--Sobic006G273100 Sobic003G057800 Sobic003G057800 Sobic004G291800--Sobic003G057800 Sobic004G088100 Sobic004G088100 Sobic009G082200--Sobic004G088100 Sobic002G040800 Sobic002G040800 Sobic009G082200--Sobic002G040800 Sobic009G154600 Sobic009G154600 Sobic009G082200--Sobic009G154600 Sobic005G008001 Sobic005G008001 Sobic009G082200--Sobic005G008001 Sobic008G125600 Sobic008G125600 Sobic009G082200--Sobic008G125600 Sobic009G082200--Sobic001G377000 Sobic002G273700 Sobic002G273700 Sobic009G082200--Sobic002G273700 Sobic001G031300 Sobic001G031300 Sobic009G082200--Sobic001G031300 Sobic003G222300 Sobic003G222300 Sobic009G082200--Sobic003G222300 Sobic001G053900--Sobic004G096300 Sobic002G376700 Sobic002G376700 Sobic001G053900--Sobic002G376700 Sobic010G214000 Sobic010G214000 Sobic001G053900--Sobic010G214000 Sobic001G291200 Sobic001G291200 Sobic001G053900--Sobic001G291200 Sobic001G053900--Sobic003G264901 Sobic004G113800 Sobic004G113800 Sobic001G053900--Sobic004G113800 Sobic006G172900 Sobic006G172900 Sobic001G053900--Sobic006G172900 Sobic001G053900--Sobic008G152200 Sobic001G053900--Sobic007G071000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.