Gene annotation
Transcriptome id Sobic.003G290900.1,Sobic.003G290900.2
Synonym Sb03g034150
Functional annotation glutamate carboxypeptidase 2, putative, expressed
UniProt A0A1B6Q5Y6 , A0A1W0VZG0
Pfam PF02225 PF04389 PF04253
Panther DB PTHR10404 PTHR10404:SF45
NCBI CDD KOG2195; Transferrin receptor and related proteins containing the protease-associated (PA) domain
KEGG Orthology K01301; N-acetylated-alpha-linked acidic dipeptidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19740 : Peptidase M28 family protein
RAP-DB (Rice) LOC_Os01g53800.1,LOC_Os01g53810.1 : glutamate carboxypeptidase 2, putative, expressed,peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a027655 , Zm00025a027658
Brachypodium PNT72818 , KQK09681 , KQK09680 , KQK09654
Barley HORVU0Hr1G020840.1 , HORVU0Hr1G020840.2 , HORVU0Hr1G020840.3 , HORVU3Hr1G070560.2 , HORVU3Hr1G070550.1 , HORVU3Hr1G070550.2 , HORVU3Hr1G070550.3 , HORVU3Hr1G070550.4 , HORVU3Hr1G070550.5 , HORVU3Hr1G070550.6 , HORVU3Hr1G070540.14 , HORVU3Hr1G070540.13 , HORVU3Hr1G070540.12 , HORVU3Hr1G070540.11 , HORVU3Hr1G070540.10 , HORVU3Hr1G070540.7 , HORVU3Hr1G070540.5 , HORVU3Hr1G070540.4 , HORVU3Hr1G070540.9 , HORVU3Hr1G070540.8 , HORVU0Hr1G020850.3 , HORVU0Hr1G020850.2 , HORVU0Hr1G020850.1 , HORVU0Hr1G020860.1 , HORVU3Hr1G070560.1
Wheat TraesCS3B02G310900 , TraesCS3B02G310900 , TraesCS3D02G276900 , TraesCS3A02G276800 , TraesCS3A02G276800 , TraesCS3A02G276700 , TraesCS3A02G276700 , TraesCS3D02G277000 , TraesCS3D02G277000 , TraesCS3B02G311000 , TraesCS3B02G311000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G290900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G277000 heat shock protein DnaJ, putative, expressed -
2 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
3 Sobic.005G133800 NEF1, putative, expressed -
4 Sobic.008G054600 splicing factor, putative, expressed -
5 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
6 Sobic.009G134900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
8 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
9 Sobic.007G005500 ECT protein, putative, expressed -
10 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
12 Sobic.005G003500 - -
13 Sobic.010G102600 pentatricopeptide, putative, expressed -
14 Sobic.001G288700 armadillo/beta-catenin-like repeat containing protein, expressed -
15 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
17 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
18 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
19 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
20 Sobic.004G092600 NOL1/NOP2/sun family protein, putative, expressed K15264: NSUN5, WBSCR20, 25S rRNA (cytosine2278-C5)-methyltransferase


Gene co-expression network
sample Sobic003G290900 Sobic003G290900 Sobic006G277000 Sobic006G277000 Sobic003G290900--Sobic006G277000 Sobic006G166200 Sobic006G166200 Sobic003G290900--Sobic006G166200 Sobic005G133800 Sobic005G133800 Sobic003G290900--Sobic005G133800 Sobic008G054600 Sobic008G054600 Sobic003G290900--Sobic008G054600 Sobic007G155500 Sobic007G155500 Sobic003G290900--Sobic007G155500 Sobic009G134900 Sobic009G134900 Sobic003G290900--Sobic009G134900 Sobic003G143800 Sobic003G143800 Sobic003G290900--Sobic003G143800 Sobic008G157200 Sobic008G157200 Sobic003G290900--Sobic008G157200 Sobic007G005500 Sobic007G005500 Sobic003G290900--Sobic007G005500 Sobic004G241900 Sobic004G241900 Sobic006G277000--Sobic004G241900 Sobic006G277000--Sobic006G166200 Sobic001G015400 Sobic001G015400 Sobic006G277000--Sobic001G015400 Sobic006G196300 Sobic006G196300 Sobic006G277000--Sobic006G196300 Sobic002G398700 Sobic002G398700 Sobic006G277000--Sobic002G398700 Sobic006G277000--Sobic007G005500 Sobic002G238400 Sobic002G238400 Sobic006G277000--Sobic002G238400 Sobic001G474400 Sobic001G474400 Sobic006G277000--Sobic001G474400 Sobic007G112600 Sobic007G112600 Sobic006G277000--Sobic007G112600 Sobic006G166200--Sobic005G133800 Sobic004G053500 Sobic004G053500 Sobic006G166200--Sobic004G053500 Sobic008G124800 Sobic008G124800 Sobic006G166200--Sobic008G124800 Sobic003G405500 Sobic003G405500 Sobic006G166200--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic006G166200--Sobic006G224800 Sobic001G145400 Sobic001G145400 Sobic006G166200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic006G166200--Sobic010G059500 Sobic002G235200 Sobic002G235200 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700 Sobic005G133800--Sobic006G166200 Sobic005G133800--Sobic004G053500 Sobic002G430300 Sobic002G430300 Sobic005G133800--Sobic002G430300 Sobic005G133800--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic005G133800--Sobic005G110499 Sobic005G133800--Sobic003G405500 Sobic004G256500 Sobic004G256500 Sobic005G133800--Sobic004G256500 Sobic003G062300 Sobic003G062300 Sobic005G133800--Sobic003G062300 Sobic001G058200 Sobic001G058200 Sobic005G133800--Sobic001G058200 Sobic001G014300 Sobic001G014300 Sobic008G054600--Sobic001G014300 Sobic008G054600--Sobic004G256500 Sobic004G096400 Sobic004G096400 Sobic008G054600--Sobic004G096400 Sobic002G396500 Sobic002G396500 Sobic008G054600--Sobic002G396500 Sobic008G054600--Sobic003G405500 Sobic008G054600--Sobic006G224800 Sobic009G084900 Sobic009G084900 Sobic008G054600--Sobic009G084900 Sobic008G054600--Sobic006G166200 Sobic004G236800 Sobic004G236800 Sobic008G054600--Sobic004G236800 Sobic007G155500--Sobic003G143800 Sobic010G114900 Sobic010G114900 Sobic007G155500--Sobic010G114900 Sobic001G453000 Sobic001G453000 Sobic007G155500--Sobic001G453000 Sobic006G125500 Sobic006G125500 Sobic007G155500--Sobic006G125500 Sobic007G155500--Sobic006G166200 Sobic007G155500--Sobic008G054600 Sobic002G179400 Sobic002G179400 Sobic007G155500--Sobic002G179400 Sobic005G026400 Sobic005G026400 Sobic007G155500--Sobic005G026400 Sobic007G155500--Sobic008G124800 Sobic004G322300 Sobic004G322300 Sobic009G134900--Sobic004G322300 Sobic004G357400 Sobic004G357400 Sobic009G134900--Sobic004G357400 Sobic001G488100 Sobic001G488100 Sobic009G134900--Sobic001G488100 Sobic004G315500 Sobic004G315500 Sobic009G134900--Sobic004G315500 Sobic004G224600 Sobic004G224600 Sobic009G134900--Sobic004G224600 Sobic010G081700 Sobic010G081700 Sobic009G134900--Sobic010G081700 Sobic009G134900--Sobic001G015400 Sobic010G188000 Sobic010G188000 Sobic009G134900--Sobic010G188000 Sobic003G230600 Sobic003G230600 Sobic009G134900--Sobic003G230600 Sobic003G143800--Sobic008G124800 Sobic006G021700 Sobic006G021700 Sobic003G143800--Sobic006G021700 Sobic003G143800--Sobic001G015400 Sobic003G143800--Sobic007G155500 Sobic008G092800 Sobic008G092800 Sobic003G143800--Sobic008G092800 Sobic002G340900 Sobic002G340900 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic005G114500 Sobic005G114500 Sobic003G143800--Sobic005G114500 Sobic003G143800--Sobic003G405500 Sobic006G073200 Sobic006G073200 Sobic008G157200--Sobic006G073200 Sobic006G127600 Sobic006G127600 Sobic008G157200--Sobic006G127600 Sobic004G131300 Sobic004G131300 Sobic008G157200--Sobic004G131300 Sobic008G157200--Sobic009G084900 Sobic003G314700 Sobic003G314700 Sobic008G157200--Sobic003G314700 Sobic007G162100 Sobic007G162100 Sobic008G157200--Sobic007G162100 Sobic008G157200--Sobic003G405500 Sobic001G248100 Sobic001G248100 Sobic008G157200--Sobic001G248100 Sobic001G404600 Sobic001G404600 Sobic008G157200--Sobic001G404600 Sobic003G209200 Sobic003G209200 Sobic007G005500--Sobic003G209200 Sobic007G005500--Sobic004G241900 Sobic005G062200 Sobic005G062200 Sobic007G005500--Sobic005G062200 Sobic006G260500 Sobic006G260500 Sobic007G005500--Sobic006G260500 Sobic007G005500--Sobic006G021700 Sobic010G169900 Sobic010G169900 Sobic007G005500--Sobic010G169900 Sobic010G000800 Sobic010G000800 Sobic007G005500--Sobic010G000800 Sobic004G261600 Sobic004G261600 Sobic007G005500--Sobic004G261600 Sobic006G077300 Sobic006G077300 Sobic007G005500--Sobic006G077300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.