Gene annotation
Transcriptome id Sobic.003G388500.3
Synonym
Functional annotation -
UniProt A0A1W0W0V9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os09g24870.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G210600 GTPase-activating protein, putative, expressed -
2 Sobic.004G122300 - -
3 Sobic.009G012900 leucine rich repeat protein, putative, expressed -
4 Sobic.004G265800 uridine kinase, putative, expressed -
5 Sobic.001G351800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@integral membrane protein, putative, expressed -
6 Sobic.007G220000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@C3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
7 Sobic.009G130000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
8 Sobic.008G003300 - -
9 Sobic.004G185400 - -
10 Sobic.001G462500 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
11 Sobic.002G249200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed -
12 Sobic.010G160066 - -
13 Sobic.001G275500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
14 Sobic.001G333300 circadian clock coupling factor-related, putative, expressed -
15 Sobic.003G291200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
16 Sobic.001G223900 - -
17 Sobic.001G508100 expressed protein -
18 Sobic.004G213900 trafficking protein particle complex subunit, putative, expressed -
19 Sobic.003G069875 - -
20 Sobic.007G068900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein


Gene co-expression network
sample Sobic003G388500 Sobic003G388500 Sobic009G210600 Sobic009G210600 Sobic003G388500--Sobic009G210600 Sobic004G122300 Sobic004G122300 Sobic003G388500--Sobic004G122300 Sobic009G012900 Sobic009G012900 Sobic003G388500--Sobic009G012900 Sobic004G265800 Sobic004G265800 Sobic003G388500--Sobic004G265800 Sobic001G351800 Sobic001G351800 Sobic003G388500--Sobic001G351800 Sobic007G220000 Sobic007G220000 Sobic003G388500--Sobic007G220000 Sobic009G130000 Sobic009G130000 Sobic003G388500--Sobic009G130000 Sobic008G003300 Sobic008G003300 Sobic003G388500--Sobic008G003300 Sobic004G185400 Sobic004G185400 Sobic003G388500--Sobic004G185400 Sobic004G255200 Sobic004G255200 Sobic009G210600--Sobic004G255200 Sobic010G210200 Sobic010G210200 Sobic009G210600--Sobic010G210200 Sobic005G086100 Sobic005G086100 Sobic009G210600--Sobic005G086100 Sobic002G087800 Sobic002G087800 Sobic009G210600--Sobic002G087800 Sobic009G167700 Sobic009G167700 Sobic009G210600--Sobic009G167700 Sobic003G354400 Sobic003G354400 Sobic009G210600--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G210600--Sobic001G334600 Sobic004G225100 Sobic004G225100 Sobic009G210600--Sobic004G225100 Sobic004G345800 Sobic004G345800 Sobic009G210600--Sobic004G345800 Sobic003G170400 Sobic003G170400 Sobic004G122300--Sobic003G170400 Sobic002G148000 Sobic002G148000 Sobic004G122300--Sobic002G148000 Sobic004G122300--Sobic003G388500 Sobic004G188000 Sobic004G188000 Sobic004G122300--Sobic004G188000 Sobic004G122300--Sobic004G185400 Sobic003G285300 Sobic003G285300 Sobic004G122300--Sobic003G285300 Sobic006G007800 Sobic006G007800 Sobic004G122300--Sobic006G007800 Sobic004G122100 Sobic004G122100 Sobic004G122300--Sobic004G122100 Sobic004G122300--Sobic009G012900 Sobic002G058200 Sobic002G058200 Sobic009G012900--Sobic002G058200 Sobic009G029600 Sobic009G029600 Sobic009G012900--Sobic009G029600 Sobic002G011600 Sobic002G011600 Sobic009G012900--Sobic002G011600 Sobic003G216000 Sobic003G216000 Sobic009G012900--Sobic003G216000 Sobic006G030700 Sobic006G030700 Sobic009G012900--Sobic006G030700 Sobic010G170550 Sobic010G170550 Sobic009G012900--Sobic010G170550 Sobic002G215800 Sobic002G215800 Sobic009G012900--Sobic002G215800 Sobic009G012900--Sobic001G351800 Sobic002G098200 Sobic002G098200 Sobic009G012900--Sobic002G098200 Sobic004G131040 Sobic004G131040 Sobic004G265800--Sobic004G131040 Sobic001G462500 Sobic001G462500 Sobic004G265800--Sobic001G462500 Sobic007G004500 Sobic007G004500 Sobic004G265800--Sobic007G004500 Sobic003G200100 Sobic003G200100 Sobic004G265800--Sobic003G200100 Sobic004G065000 Sobic004G065000 Sobic004G265800--Sobic004G065000 Sobic004G265800--Sobic001G351800 Sobic003G322700 Sobic003G322700 Sobic004G265800--Sobic003G322700 Sobic006G204900 Sobic006G204900 Sobic004G265800--Sobic006G204900 Sobic002G266000 Sobic002G266000 Sobic004G265800--Sobic002G266000 Sobic004G034600 Sobic004G034600 Sobic001G351800--Sobic004G034600 Sobic001G351800--Sobic003G322700 Sobic001G351800--Sobic002G266000 Sobic003G010600 Sobic003G010600 Sobic001G351800--Sobic003G010600 Sobic004G124200 Sobic004G124200 Sobic001G351800--Sobic004G124200 Sobic009G034700 Sobic009G034700 Sobic001G351800--Sobic009G034700 Sobic010G192800 Sobic010G192800 Sobic001G351800--Sobic010G192800 Sobic004G225200 Sobic004G225200 Sobic001G351800--Sobic004G225200 Sobic001G282600 Sobic001G282600 Sobic001G351800--Sobic001G282600 Sobic007G220000--Sobic004G265800 Sobic007G220000--Sobic007G004500 Sobic003G129600 Sobic003G129600 Sobic007G220000--Sobic003G129600 Sobic003G059300 Sobic003G059300 Sobic007G220000--Sobic003G059300 Sobic003G320700 Sobic003G320700 Sobic007G220000--Sobic003G320700 Sobic004G329300 Sobic004G329300 Sobic007G220000--Sobic004G329300 Sobic006G146100 Sobic006G146100 Sobic007G220000--Sobic006G146100 Sobic001G517800 Sobic001G517800 Sobic007G220000--Sobic001G517800 Sobic007G220000--Sobic001G462500 Sobic005G093800 Sobic005G093800 Sobic009G130000--Sobic005G093800 Sobic005G156400 Sobic005G156400 Sobic009G130000--Sobic005G156400 Sobic006G276100 Sobic006G276100 Sobic009G130000--Sobic006G276100 Sobic001G227900 Sobic001G227900 Sobic009G130000--Sobic001G227900 Sobic002G115050 Sobic002G115050 Sobic009G130000--Sobic002G115050 Sobic005G075100 Sobic005G075100 Sobic009G130000--Sobic005G075100 Sobic009G130000--Sobic003G129600 Sobic002G059932 Sobic002G059932 Sobic009G130000--Sobic002G059932 Sobic003G190100 Sobic003G190100 Sobic009G130000--Sobic003G190100 Sobic008G089800 Sobic008G089800 Sobic008G003300--Sobic008G089800 Sobic003G418733 Sobic003G418733 Sobic008G003300--Sobic003G418733 Sobic006G060601 Sobic006G060601 Sobic008G003300--Sobic006G060601 Sobic002G118101 Sobic002G118101 Sobic008G003300--Sobic002G118101 Sobic001G000300 Sobic001G000300 Sobic008G003300--Sobic001G000300 Sobic003G080800 Sobic003G080800 Sobic008G003300--Sobic003G080800 Sobic003G164950 Sobic003G164950 Sobic008G003300--Sobic003G164950 Sobic001G053200 Sobic001G053200 Sobic008G003300--Sobic001G053200 Sobic003G069875 Sobic003G069875 Sobic008G003300--Sobic003G069875 Sobic004G185400--Sobic004G188000 Sobic002G190200 Sobic002G190200 Sobic004G185400--Sobic002G190200 Sobic004G185400--Sobic004G122300 Sobic002G103100 Sobic002G103100 Sobic004G185400--Sobic002G103100 Sobic001G317300 Sobic001G317300 Sobic004G185400--Sobic001G317300 Sobic004G185400--Sobic003G170400 Sobic007G043100 Sobic007G043100 Sobic004G185400--Sobic007G043100 Sobic002G071350 Sobic002G071350 Sobic004G185400--Sobic002G071350
Octagon: transcription factors


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