Gene annotation
Transcriptome id Sobic.004G036900.8,Sobic.004G036900.6,Sobic.004G036900.7,Sobic.004G036900.3,Sobic.004G036900.4,Sobic.004G036900.2,Sobic.004G036900.5,Sobic.004G036900.1
Synonym Sb04g003175, SbSBP7, SPL2
Functional annotation Highest expression level in primordial inflorescence (PubMedID : 27501690)
OsSPL3 - SBP-box gene family member, expressed
UniProt A0A1Z5RKS6 , A0A1Z5RKR4 , C5XUJ3
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G43270 : squamosa promoter binding protein-like 2
RAP-DB (Rice) LOC_Os02g04680.2,LOC_Os02g04680.1 : OsSPL3 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a034775 , Zm00025a034900 , Zm00025a018945
Brachypodium -
Barley HORVU6Hr1G019700.20 , HORVU6Hr1G019700.15 , HORVU6Hr1G019700.14 , HORVU6Hr1G019700.17 , HORVU6Hr1G019700.16 , HORVU6Hr1G019700.11 , HORVU6Hr1G019700.10 , HORVU6Hr1G019700.13 , HORVU6Hr1G019700.12 , HORVU6Hr1G019700.19 , HORVU6Hr1G019700.18 , HORVU6Hr1G031450.9 , HORVU6Hr1G031450.8 , HORVU6Hr1G031450.3 , HORVU6Hr1G031450.2 , HORVU6Hr1G031450.1 , HORVU6Hr1G031450.6 , HORVU6Hr1G031450.5 , HORVU6Hr1G031450.4 , HORVU6Hr1G019700.1 , HORVU6Hr1G019700.3 , HORVU6Hr1G019700.2 , HORVU6Hr1G019700.5 , HORVU6Hr1G019700.4 , HORVU6Hr1G019700.7 , HORVU6Hr1G019700.6 , HORVU6Hr1G019700.9
Wheat TraesCS6B02G138400 , TraesCS6A02G155300 , TraesCS6B02G183400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332800 GTPase-activating protein, putative, expressed -
2 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
3 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
4 Sobic.001G456900 expressed protein -
5 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
6 Sobic.003G429650 - -
7 Sobic.004G182900 PHD finger protein, putative, expressed -
8 Sobic.010G277500 expressed protein -
9 Sobic.007G099100 - -
10 Sobic.008G113100 protein binding protein, putative, expressed -
11 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
12 Sobic.009G209300 starch synthase, putative, expressed -
13 Sobic.004G258700 PHD-finger family protein, expressed -
14 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
15 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
16 Sobic.003G173950 - -
17 Sobic.003G241800 - -
18 Sobic.003G179201 - -
19 Sobic.006G220000 bromodomain containing protein, expressed -
20 Sobic.002G320500 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G036900 Sobic004G036900 Sobic003G332800 Sobic003G332800 Sobic004G036900--Sobic003G332800 Sobic003G148000 Sobic003G148000 Sobic004G036900--Sobic003G148000 Sobic004G039200 Sobic004G039200 Sobic004G036900--Sobic004G039200 Sobic001G456900 Sobic001G456900 Sobic004G036900--Sobic001G456900 Sobic001G274200 Sobic001G274200 Sobic004G036900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic004G036900--Sobic003G429650 Sobic004G182900 Sobic004G182900 Sobic004G036900--Sobic004G182900 Sobic010G277500 Sobic010G277500 Sobic004G036900--Sobic010G277500 Sobic007G099100 Sobic007G099100 Sobic004G036900--Sobic007G099100 Sobic007G096600 Sobic007G096600 Sobic003G332800--Sobic007G096600 Sobic006G216800 Sobic006G216800 Sobic003G332800--Sobic006G216800 Sobic003G332800--Sobic003G148000 Sobic002G006900 Sobic002G006900 Sobic003G332800--Sobic002G006900 Sobic007G167500 Sobic007G167500 Sobic003G332800--Sobic007G167500 Sobic009G209300 Sobic009G209300 Sobic003G332800--Sobic009G209300 Sobic002G243900 Sobic002G243900 Sobic003G332800--Sobic002G243900 Sobic007G065400 Sobic007G065400 Sobic003G332800--Sobic007G065400 Sobic003G176500 Sobic003G176500 Sobic003G332800--Sobic003G176500 Sobic005G144400 Sobic005G144400 Sobic003G148000--Sobic005G144400 Sobic002G180666 Sobic002G180666 Sobic003G148000--Sobic002G180666 Sobic002G145101 Sobic002G145101 Sobic003G148000--Sobic002G145101 Sobic006G048500 Sobic006G048500 Sobic003G148000--Sobic006G048500 Sobic003G148000--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G148000--Sobic001G214300 Sobic003G148000--Sobic007G096600 Sobic003G148000--Sobic003G429650 Sobic004G258700 Sobic004G258700 Sobic003G148000--Sobic004G258700 Sobic009G024000 Sobic009G024000 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic007G161000 Sobic007G161000 Sobic004G039200--Sobic007G161000 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic007G117400 Sobic007G117400 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic010G139000 Sobic010G139000 Sobic001G456900--Sobic010G139000 Sobic001G456900--Sobic004G258700 Sobic001G456900--Sobic008G113100 Sobic001G456900--Sobic008G028700 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic003G398700 Sobic003G398700 Sobic001G456900--Sobic003G398700 Sobic001G456900--Sobic003G101500 Sobic001G420200 Sobic001G420200 Sobic001G274200--Sobic001G420200 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic003G429650--Sobic006G048500 Sobic006G182900 Sobic006G182900 Sobic003G429650--Sobic006G182900 Sobic003G429650--Sobic003G148000 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic003G429650--Sobic002G243900 Sobic003G429650--Sobic001G214300 Sobic003G429650--Sobic002G006900 Sobic004G294700 Sobic004G294700 Sobic004G182900--Sobic004G294700 Sobic009G191100 Sobic009G191100 Sobic004G182900--Sobic009G191100 Sobic007G136800 Sobic007G136800 Sobic004G182900--Sobic007G136800 Sobic004G178100 Sobic004G178100 Sobic004G182900--Sobic004G178100 Sobic006G031800 Sobic006G031800 Sobic004G182900--Sobic006G031800 Sobic004G183000 Sobic004G183000 Sobic004G182900--Sobic004G183000 Sobic002G358500 Sobic002G358500 Sobic004G182900--Sobic002G358500 Sobic010G016900 Sobic010G016900 Sobic004G182900--Sobic010G016900 Sobic010G043800 Sobic010G043800 Sobic004G182900--Sobic010G043800 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic003G280800 Sobic003G280800 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic010G277500--Sobic006G216800 Sobic001G035900 Sobic001G035900 Sobic007G099100--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic007G099100--Sobic003G254000 Sobic002G031400 Sobic002G031400 Sobic007G099100--Sobic002G031400 Sobic007G099100--Sobic010G277500 Sobic007G099100--Sobic001G274200 Sobic010G136600 Sobic010G136600 Sobic007G099100--Sobic010G136600 Sobic002G064750 Sobic002G064750 Sobic007G099100--Sobic002G064750 Sobic007G099100--Sobic006G216800 Sobic007G099100--Sobic006G209850
Octagon: transcription factors


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