Gene annotation
Transcriptome id Sobic.004G070400.1
Synonym emb2746, Sb04g005902
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
metallo-beta-lactamase, putative, expressed
UniProt A0A1Z5RLA5
Pfam PF13837
Panther DB PTHR11203 PTHR11203:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G63420 : RNA-metabolising metallo-beta-lactamase family protein
RAP-DB (Rice) LOC_Os02g33610.1 : metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a034711 , Zm00025a056645 , Zm00025a019334
Brachypodium KQJ99786
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G104050 - -
2 Sobic.004G045100 phytosulfokine receptor precursor, putative, expressed -
3 Sobic.004G070150 - -
4 Sobic.001G296600 - -
5 Sobic.004G357600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Sucrose synthase genes(PubMedID : 24456189)@sucrose synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose synthase, putative, expressed K00695: sucrose synthase
6 Sobic.004G139201 - -
7 Sobic.003G276700 "domain confirmed by Pfam database, expressed in flower, expression induced by IAA and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
8 Sobic.004G084800 - -
9 Sobic.010G265400 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
10 Sobic.003G335000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine-rich repeat family protein, putative, expressed -
11 Sobic.007G173901 - -
12 Sobic.002G411700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.010G054150 - -
14 Sobic.010G084900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
15 Sobic.006G065000 - -
16 Sobic.004G203633 - -
17 Sobic.001G065400 - -
18 Sobic.001G079150 - -
19 Sobic.007G174000 carrier, putative, expressed -
20 Sobic.007G052000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5


Gene co-expression network
sample Sobic004G070400 Sobic004G070400 Sobic001G104050 Sobic001G104050 Sobic004G070400--Sobic001G104050 Sobic004G045100 Sobic004G045100 Sobic004G070400--Sobic004G045100 Sobic004G070150 Sobic004G070150 Sobic004G070400--Sobic004G070150 Sobic001G296600 Sobic001G296600 Sobic004G070400--Sobic001G296600 Sobic004G357600 Sobic004G357600 Sobic004G070400--Sobic004G357600 Sobic004G139201 Sobic004G139201 Sobic004G070400--Sobic004G139201 Sobic003G276700 Sobic003G276700 Sobic004G070400--Sobic003G276700 Sobic004G084800 Sobic004G084800 Sobic004G070400--Sobic004G084800 Sobic010G265400 Sobic010G265400 Sobic004G070400--Sobic010G265400 Sobic001G104050--Sobic001G296600 Sobic001G104050--Sobic010G265400 Sobic001G104050--Sobic004G357600 Sobic002G411700 Sobic002G411700 Sobic001G104050--Sobic002G411700 Sobic007G044350 Sobic007G044350 Sobic001G104050--Sobic007G044350 Sobic001G104050--Sobic004G070400 Sobic004G249200 Sobic004G249200 Sobic001G104050--Sobic004G249200 Sobic001G036400 Sobic001G036400 Sobic001G104050--Sobic001G036400 Sobic001G104050--Sobic004G070150 Sobic004G045100--Sobic004G070400 Sobic004G045100--Sobic004G139201 Sobic004G045100--Sobic004G357600 Sobic009G026900 Sobic009G026900 Sobic004G045100--Sobic009G026900 Sobic007G174000 Sobic007G174000 Sobic004G045100--Sobic007G174000 Sobic003G177350 Sobic003G177350 Sobic004G045100--Sobic003G177350 Sobic002G315450 Sobic002G315450 Sobic004G045100--Sobic002G315450 Sobic008G165500 Sobic008G165500 Sobic004G045100--Sobic008G165500 Sobic004G045100--Sobic001G104050 Sobic010G054150 Sobic010G054150 Sobic004G070150--Sobic010G054150 Sobic004G070150--Sobic003G276700 Sobic002G107700 Sobic002G107700 Sobic004G070150--Sobic002G107700 Sobic003G399800 Sobic003G399800 Sobic004G070150--Sobic003G399800 Sobic004G237900 Sobic004G237900 Sobic004G070150--Sobic004G237900 Sobic007G137750 Sobic007G137750 Sobic004G070150--Sobic007G137750 Sobic010G084900 Sobic010G084900 Sobic004G070150--Sobic010G084900 Sobic007G052000 Sobic007G052000 Sobic004G070150--Sobic007G052000 Sobic004G070150--Sobic001G296600 Sobic001G296600--Sobic001G104050 Sobic001G296600--Sobic007G044350 Sobic004G223350 Sobic004G223350 Sobic001G296600--Sobic004G223350 Sobic001G296600--Sobic004G357600 Sobic003G267600 Sobic003G267600 Sobic001G296600--Sobic003G267600 Sobic007G173901 Sobic007G173901 Sobic001G296600--Sobic007G173901 Sobic004G205900 Sobic004G205900 Sobic001G296600--Sobic004G205900 Sobic001G296600--Sobic003G276700 Sobic002G008701 Sobic002G008701 Sobic001G296600--Sobic002G008701 Sobic004G357600--Sobic004G249200 Sobic004G357600--Sobic001G296600 Sobic004G357600--Sobic001G104050 Sobic005G222000 Sobic005G222000 Sobic004G357600--Sobic005G222000 Sobic007G174500 Sobic007G174500 Sobic004G357600--Sobic007G174500 Sobic004G357600--Sobic007G174000 Sobic004G138100 Sobic004G138100 Sobic004G357600--Sobic004G138100 Sobic004G357600--Sobic010G265400 Sobic009G011100 Sobic009G011100 Sobic004G357600--Sobic009G011100 Sobic007G218550 Sobic007G218550 Sobic004G139201--Sobic007G218550 Sobic002G185000 Sobic002G185000 Sobic004G139201--Sobic002G185000 Sobic004G139201--Sobic009G026900 Sobic001G418300 Sobic001G418300 Sobic004G139201--Sobic001G418300 Sobic004G139201--Sobic004G084800 Sobic006G107332 Sobic006G107332 Sobic004G139201--Sobic006G107332 Sobic001G025201 Sobic001G025201 Sobic004G139201--Sobic001G025201 Sobic003G076300 Sobic003G076300 Sobic004G139201--Sobic003G076300 Sobic004G026900 Sobic004G026900 Sobic004G139201--Sobic004G026900 Sobic003G276700--Sobic004G070150 Sobic009G049100 Sobic009G049100 Sobic003G276700--Sobic009G049100 Sobic003G276700--Sobic010G084900 Sobic008G024700 Sobic008G024700 Sobic003G276700--Sobic008G024700 Sobic002G142350 Sobic002G142350 Sobic003G276700--Sobic002G142350 Sobic003G276700--Sobic001G296600 Sobic003G276700--Sobic004G223350 Sobic007G016200 Sobic007G016200 Sobic003G276700--Sobic007G016200 Sobic003G276700--Sobic003G267600 Sobic004G084800--Sobic004G139201 Sobic004G084800--Sobic007G218550 Sobic010G083200 Sobic010G083200 Sobic004G084800--Sobic010G083200 Sobic004G341500 Sobic004G341500 Sobic004G084800--Sobic004G341500 Sobic002G269700 Sobic002G269700 Sobic004G084800--Sobic002G269700 Sobic001G005100 Sobic001G005100 Sobic004G084800--Sobic001G005100 Sobic002G162900 Sobic002G162900 Sobic004G084800--Sobic002G162900 Sobic003G390600 Sobic003G390600 Sobic004G084800--Sobic003G390600 Sobic002G268250 Sobic002G268250 Sobic004G084800--Sobic002G268250 Sobic010G265400--Sobic001G036400 Sobic001G079150 Sobic001G079150 Sobic010G265400--Sobic001G079150 Sobic009G209150 Sobic009G209150 Sobic010G265400--Sobic009G209150 Sobic006G128150 Sobic006G128150 Sobic010G265400--Sobic006G128150 Sobic010G028333 Sobic010G028333 Sobic010G265400--Sobic010G028333 Sobic001G431600 Sobic001G431600 Sobic010G265400--Sobic001G431600 Sobic002G256250 Sobic002G256250 Sobic010G265400--Sobic002G256250 Sobic002G170000 Sobic002G170000 Sobic010G265400--Sobic002G170000 Sobic005G118500 Sobic005G118500 Sobic010G265400--Sobic005G118500
Octagon: transcription factors


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