Gene annotation
Transcriptome id Sobic.004G107000.4,Sobic.004G107000.3
Synonym ATDMC1, ARLIM15, Sb04g008730, DMC1
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt A0A1Z5RLZ5 , A0A1Z5RMU4
Pfam PF00154
Panther DB PTHR22942 PTHR22942:SF30
NCBI CDD KOG1434; Meiotic recombination protein Dmc1
KEGG Orthology K10872; meiotic recombination protein DMC1
Gene Ontology GO:0009432; SOS response GO:0006281DNA repair GO:0005524ATP binding GO:0003697single-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT3G22880 : DNA repair (Rad51) family protein
RAP-DB (Rice) LOC_Os11g04954.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a028946 , Zm00025a041041
Brachypodium PNT65469 , KQJ92333
Barley HORVU5Hr1G040730.3 , HORVU5Hr1G040730.5 , HORVU5Hr1G040730.4 , HORVU5Hr1G040730.2
Wheat TraesCS5A02G133000 , TraesCS5D02G141200 , TraesCS5B02G131900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G283100 josephin, putative, expressed -
2 Sobic.004G186100 expressed protein -
3 Sobic.010G013400 exosome complex exonuclease rrp4, putative, expressed -
4 Sobic.004G226500 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
5 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
6 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
7 Sobic.001G347700 protein phosphotase protein, putative, expressed -
8 Sobic.006G271000 mis12 protein, expressed -
9 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
10 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.006G259401 - K06130: lysophospholipase II
12 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
13 Sobic.008G062300 inositol-1-monophosphatase, putative, expressed K15422: 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase
14 Sobic.001G475000 expressed protein -
15 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
16 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
17 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
18 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
19 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
20 Sobic.006G261600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amine oxidase, flavin-containing, domain containing protein, expressed K17839: PAO4, PAO3, polyamine oxidase


Gene co-expression network
sample Sobic004G107000 Sobic004G107000 Sobic002G283100 Sobic002G283100 Sobic004G107000--Sobic002G283100 Sobic004G186100 Sobic004G186100 Sobic004G107000--Sobic004G186100 Sobic010G013400 Sobic010G013400 Sobic004G107000--Sobic010G013400 Sobic004G226500 Sobic004G226500 Sobic004G107000--Sobic004G226500 Sobic010G040900 Sobic010G040900 Sobic004G107000--Sobic010G040900 Sobic002G222200 Sobic002G222200 Sobic004G107000--Sobic002G222200 Sobic001G347700 Sobic001G347700 Sobic004G107000--Sobic001G347700 Sobic006G271000 Sobic006G271000 Sobic004G107000--Sobic006G271000 Sobic001G073600 Sobic001G073600 Sobic004G107000--Sobic001G073600 Sobic006G259401 Sobic006G259401 Sobic002G283100--Sobic006G259401 Sobic010G122100 Sobic010G122100 Sobic002G283100--Sobic010G122100 Sobic003G236800 Sobic003G236800 Sobic002G283100--Sobic003G236800 Sobic001G239900 Sobic001G239900 Sobic002G283100--Sobic001G239900 Sobic002G201700 Sobic002G201700 Sobic002G283100--Sobic002G201700 Sobic008G151500 Sobic008G151500 Sobic002G283100--Sobic008G151500 Sobic009G083800 Sobic009G083800 Sobic002G283100--Sobic009G083800 Sobic001G000400 Sobic001G000400 Sobic002G283100--Sobic001G000400 Sobic002G283100--Sobic004G107000 Sobic010G002800 Sobic010G002800 Sobic004G186100--Sobic010G002800 Sobic009G206600 Sobic009G206600 Sobic004G186100--Sobic009G206600 Sobic007G022700 Sobic007G022700 Sobic004G186100--Sobic007G022700 Sobic010G258000 Sobic010G258000 Sobic004G186100--Sobic010G258000 Sobic007G003100 Sobic007G003100 Sobic004G186100--Sobic007G003100 Sobic003G222700 Sobic003G222700 Sobic004G186100--Sobic003G222700 Sobic004G186100--Sobic001G073600 Sobic006G203900 Sobic006G203900 Sobic004G186100--Sobic006G203900 Sobic003G085500 Sobic003G085500 Sobic004G186100--Sobic003G085500 Sobic010G257500 Sobic010G257500 Sobic010G013400--Sobic010G257500 Sobic010G009600 Sobic010G009600 Sobic010G013400--Sobic010G009600 Sobic008G174500 Sobic008G174500 Sobic010G013400--Sobic008G174500 Sobic004G014100 Sobic004G014100 Sobic010G013400--Sobic004G014100 Sobic003G042200 Sobic003G042200 Sobic010G013400--Sobic003G042200 Sobic001G534400 Sobic001G534400 Sobic010G013400--Sobic001G534400 Sobic001G196800 Sobic001G196800 Sobic010G013400--Sobic001G196800 Sobic001G506300 Sobic001G506300 Sobic010G013400--Sobic001G506300 Sobic002G238800 Sobic002G238800 Sobic010G013400--Sobic002G238800 Sobic006G126000 Sobic006G126000 Sobic004G226500--Sobic006G126000 Sobic004G226500--Sobic010G040900 Sobic009G117200 Sobic009G117200 Sobic004G226500--Sobic009G117200 Sobic003G096000 Sobic003G096000 Sobic004G226500--Sobic003G096000 Sobic003G326800 Sobic003G326800 Sobic004G226500--Sobic003G326800 Sobic003G428200 Sobic003G428200 Sobic004G226500--Sobic003G428200 Sobic001G350600 Sobic001G350600 Sobic004G226500--Sobic001G350600 Sobic004G335000 Sobic004G335000 Sobic004G226500--Sobic004G335000 Sobic004G030000 Sobic004G030000 Sobic004G226500--Sobic004G030000 Sobic004G039400 Sobic004G039400 Sobic010G040900--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic010G040900--Sobic001G443200 Sobic009G191400 Sobic009G191400 Sobic010G040900--Sobic009G191400 Sobic001G008100 Sobic001G008100 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic003G135600 Sobic003G135600 Sobic010G040900--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic010G040900--Sobic004G344800 Sobic002G222200--Sobic001G073600 Sobic002G222200--Sobic010G002800 Sobic008G018200 Sobic008G018200 Sobic002G222200--Sobic008G018200 Sobic004G011700 Sobic004G011700 Sobic002G222200--Sobic004G011700 Sobic002G232400 Sobic002G232400 Sobic002G222200--Sobic002G232400 Sobic001G135200 Sobic001G135200 Sobic002G222200--Sobic001G135200 Sobic009G224400 Sobic009G224400 Sobic002G222200--Sobic009G224400 Sobic001G352800 Sobic001G352800 Sobic002G222200--Sobic001G352800 Sobic007G119600 Sobic007G119600 Sobic002G222200--Sobic007G119600 Sobic007G048700 Sobic007G048700 Sobic001G347700--Sobic007G048700 Sobic003G167000 Sobic003G167000 Sobic001G347700--Sobic003G167000 Sobic001G347700--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic001G347700--Sobic001G485300 Sobic003G260600 Sobic003G260600 Sobic001G347700--Sobic003G260600 Sobic010G028400 Sobic010G028400 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic001G347700--Sobic002G217500 Sobic004G040700 Sobic004G040700 Sobic001G347700--Sobic004G040700 Sobic006G271000--Sobic001G352800 Sobic002G153400 Sobic002G153400 Sobic006G271000--Sobic002G153400 Sobic009G220000 Sobic009G220000 Sobic006G271000--Sobic009G220000 Sobic006G271000--Sobic001G135200 Sobic001G192700 Sobic001G192700 Sobic006G271000--Sobic001G192700 Sobic001G286100 Sobic001G286100 Sobic006G271000--Sobic001G286100 Sobic006G271000--Sobic010G002800 Sobic001G348000 Sobic001G348000 Sobic006G271000--Sobic001G348000 Sobic005G210500 Sobic005G210500 Sobic006G271000--Sobic005G210500 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100
Octagon: transcription factors


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