Gene annotation
Transcriptome id Sobic.004G129800.1,Sobic.004G129800.2
Synonym Sb04g011250
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5Y073 , A0A194YPA6
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF118
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g11354.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019758 , Zm00025a043409 , Zm00025a019761
Brachypodium PNT65259 , PNT66427 , PNT60859 , KQK04934 , KQK04933 , KQJ82173 , KQJ91725 , PNT65260
Barley HORVU0Hr1G022350.3 , HORVU0Hr1G022350.1 , HORVU3Hr1G005230.1 , HORVU3Hr1G005230.3 , HORVU3Hr1G005230.2 , HORVU7Hr1G112340.10 , HORVU7Hr1G112340.11 , HORVU7Hr1G112340.12 , HORVU7Hr1G112340.13 , HORVU7Hr1G112340.14 , HORVU7Hr1G112340.15 , HORVU7Hr1G112340.16 , HORVU7Hr1G112340.17 , HORVU7Hr1G112340.9 , HORVU7Hr1G112340.2 , HORVU7Hr1G112340.3 , HORVU7Hr1G112340.1 , HORVU7Hr1G112340.7 , HORVU7Hr1G112340.5 , HORVU1Hr1G080850.10 , HORVU1Hr1G080850.11 , HORVU1Hr1G080850.8 , HORVU1Hr1G080850.9 , HORVU1Hr1G080850.4 , HORVU1Hr1G080850.5 , HORVU1Hr1G080850.6 , HORVU1Hr1G080850.7 , HORVU1Hr1G080850.1 , HORVU1Hr1G080850.2 , HORVU1Hr1G080850.3 , HORVU7Hr1G112340.8 , HORVU7Hr1G112340.6 , HORVU0Hr1G022350.2 , HORVU0Hr1G022350.6 , HORVU0Hr1G022350.4 , HORVU0Hr1G022350.5 , HORVU6Hr1G091850.1 , HORVU6Hr1G091850.2
Wheat TraesCS7A02G497300 , TraesCS7A02G033200 , TraesCS3A02G029100 , TraesCS5B02G408500 , TraesCS7B02G196100 , TraesCS1D02G357500 , TraesCS7D02G481500 , TraesCSU02G043800 , TraesCS1B02G369300 , TraesCS5D02G413800 , TraesCS7A02G230200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G223500 asparate aminotransferase, putative, expressed -
2 Sobic.003G419300 xylanase inhibitor, putative, expressed -
3 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
4 Sobic.006G124200 expressed protein -
5 Sobic.004G112200 no apical meristem protein, putative, expressed -
6 Sobic.003G019400 expressed protein -
7 Sobic.009G102400 "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
8 Sobic.009G058600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
9 Sobic.010G090100 phosphoglycerate mutase, putative, expressed K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
10 Sobic.001G232000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.001G542200 expansin precursor, putative, expressed -
12 Sobic.010G155100 NAC domain containing protein, putative, expressed -
13 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
14 Sobic.004G029450 - -
15 Sobic.002G422500 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
16 Sobic.003G405300 regulatory protein, putative, expressed -
17 Sobic.003G419400 xylanase inhibitor, putative, expressed -
18 Sobic.001G307600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
19 Sobic.010G134900 DNA binding protein, putative, expressed -
20 Sobic.003G324600 transcription factor-related, putative, expressed -


Gene co-expression network
sample Sobic004G129800 Sobic004G129800 Sobic002G223500 Sobic002G223500 Sobic004G129800--Sobic002G223500 Sobic003G419300 Sobic003G419300 Sobic004G129800--Sobic003G419300 Sobic004G214300 Sobic004G214300 Sobic004G129800--Sobic004G214300 Sobic006G124200 Sobic006G124200 Sobic004G129800--Sobic006G124200 Sobic004G112200 Sobic004G112200 Sobic004G129800--Sobic004G112200 Sobic003G019400 Sobic003G019400 Sobic004G129800--Sobic003G019400 Sobic009G102400 Sobic009G102400 Sobic004G129800--Sobic009G102400 Sobic009G058600 Sobic009G058600 Sobic004G129800--Sobic009G058600 Sobic010G090100 Sobic010G090100 Sobic004G129800--Sobic010G090100 Sobic002G193900 Sobic002G193900 Sobic002G223500--Sobic002G193900 Sobic004G152900 Sobic004G152900 Sobic002G223500--Sobic004G152900 Sobic002G223500--Sobic004G129800 Sobic003G204501 Sobic003G204501 Sobic002G223500--Sobic003G204501 Sobic002G306700 Sobic002G306700 Sobic002G223500--Sobic002G306700 Sobic004G079700 Sobic004G079700 Sobic002G223500--Sobic004G079700 Sobic007G109900 Sobic007G109900 Sobic002G223500--Sobic007G109900 Sobic004G153100 Sobic004G153100 Sobic002G223500--Sobic004G153100 Sobic007G065500 Sobic007G065500 Sobic002G223500--Sobic007G065500 Sobic001G232000 Sobic001G232000 Sobic003G419300--Sobic001G232000 Sobic003G419400 Sobic003G419400 Sobic003G419300--Sobic003G419400 Sobic008G035800 Sobic008G035800 Sobic003G419300--Sobic008G035800 Sobic003G419300--Sobic009G058600 Sobic002G239700 Sobic002G239700 Sobic003G419300--Sobic002G239700 Sobic003G419300--Sobic004G214300 Sobic003G324600 Sobic003G324600 Sobic003G419300--Sobic003G324600 Sobic003G419300--Sobic004G112200 Sobic009G208700 Sobic009G208700 Sobic003G419300--Sobic009G208700 Sobic004G214300--Sobic009G102400 Sobic004G214300--Sobic006G124200 Sobic010G155100 Sobic010G155100 Sobic004G214300--Sobic010G155100 Sobic010G134900 Sobic010G134900 Sobic004G214300--Sobic010G134900 Sobic001G261400 Sobic001G261400 Sobic004G214300--Sobic001G261400 Sobic004G214300--Sobic003G419300 Sobic004G214300--Sobic003G019400 Sobic004G214300--Sobic002G239700 Sobic004G214300--Sobic004G112200 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic006G124200--Sobic001G261400 Sobic005G105600 Sobic005G105600 Sobic006G124200--Sobic005G105600 Sobic006G013300 Sobic006G013300 Sobic006G124200--Sobic006G013300 Sobic006G124200--Sobic010G134900 Sobic006G124200--Sobic003G019400 Sobic010G177300 Sobic010G177300 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200 Sobic004G112200--Sobic009G058600 Sobic004G112200--Sobic003G324600 Sobic004G112200--Sobic002G239700 Sobic004G112200--Sobic003G419300 Sobic004G112200--Sobic004G214300 Sobic004G112200--Sobic001G232000 Sobic001G307600 Sobic001G307600 Sobic004G112200--Sobic001G307600 Sobic004G112200--Sobic010G155100 Sobic008G077900 Sobic008G077900 Sobic004G112200--Sobic008G077900 Sobic003G019400--Sobic004G214300 Sobic003G019400--Sobic003G419300 Sobic003G019400--Sobic010G090100 Sobic001G197800 Sobic001G197800 Sobic003G019400--Sobic001G197800 Sobic003G019400--Sobic001G261400 Sobic003G019400--Sobic006G124200 Sobic003G019400--Sobic009G102400 Sobic004G029450 Sobic004G029450 Sobic003G019400--Sobic004G029450 Sobic002G091000 Sobic002G091000 Sobic003G019400--Sobic002G091000 Sobic009G102400--Sobic006G124200 Sobic009G102400--Sobic004G214300 Sobic009G102400--Sobic001G261400 Sobic009G102400--Sobic010G155100 Sobic009G102400--Sobic010G134900 Sobic009G102400--Sobic010G177300 Sobic009G102400--Sobic006G013300 Sobic009G102400--Sobic005G105600 Sobic009G102400--Sobic004G112200 Sobic009G058600--Sobic004G112200 Sobic009G058600--Sobic003G419300 Sobic009G058600--Sobic001G232000 Sobic004G323300 Sobic004G323300 Sobic009G058600--Sobic004G323300 Sobic009G058600--Sobic003G324600 Sobic001G542000 Sobic001G542000 Sobic009G058600--Sobic001G542000 Sobic009G058600--Sobic008G035800 Sobic001G542200 Sobic001G542200 Sobic009G058600--Sobic001G542200 Sobic002G343100 Sobic002G343100 Sobic009G058600--Sobic002G343100 Sobic010G090100--Sobic003G019400 Sobic010G090100--Sobic001G197800 Sobic008G170500 Sobic008G170500 Sobic010G090100--Sobic008G170500 Sobic003G300900 Sobic003G300900 Sobic010G090100--Sobic003G300900 Sobic006G245500 Sobic006G245500 Sobic010G090100--Sobic006G245500 Sobic008G135500 Sobic008G135500 Sobic010G090100--Sobic008G135500 Sobic010G090100--Sobic004G029450 Sobic010G090100--Sobic001G261400 Sobic002G230900 Sobic002G230900 Sobic010G090100--Sobic002G230900
Octagon: transcription factors


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