Gene annotation
Transcriptome id Sobic.004G256200.1
Synonym SbBBX12, B-box (BBX) protein, Sb04g029480, COL9, SbBBX12;B-box (BBX) protein
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5XZS4
Pfam PF00643 PF06203
Panther DB PTHR31717 PTHR31717:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G48250 : B-box type zinc finger protein with CCT domain
RAP-DB (Rice) LOC_Os02g49230.2 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a032550 , Zm00025a021865
Brachypodium -
Barley HORVU6Hr1G071950.2 , HORVU6Hr1G071950.3 , HORVU6Hr1G071950.6 , HORVU6Hr1G071950.7 , HORVU6Hr1G071950.4 , HORVU6Hr1G071950.5 , HORVU6Hr1G071950.8 , HORVU6Hr1G071950.9 , HORVU6Hr1G071950.10 , HORVU6Hr1G071950.11 , HORVU6Hr1G071950.12 , HORVU6Hr1G071950.13 , HORVU6Hr1G071950.14 , HORVU6Hr1G071950.15 , HORVU6Hr1G071950.16 , HORVU6Hr1G071950.17
Wheat TraesCS6A02G286400 , TraesCS6A02G286400 , TraesCS6A02G286400 , TraesCS6D02G267100 , TraesCS6D02G267100 , TraesCS6B02G315400
Populus -


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cDNA sequences
Sobic.004G256200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G341100 bromodomain domain containing protein, expressed -
2 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
3 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
4 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
5 Sobic.006G120400 no apical meristem protein, putative, expressed -
6 Sobic.001G218200 expressed protein -
7 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
8 Sobic.008G073000 expressed protein -
9 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
10 Sobic.007G097700 DUF593 domain containing protein, expressed -
11 Sobic.001G033400 protein kinase domain containing protein, expressed -
12 Sobic.004G332300 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
15 Sobic.005G142000 expressed protein -
16 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
17 Sobic.007G155900 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
18 Sobic.001G418400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@cadmium tolerance factor, putative, expressed -
19 Sobic.009G100300 expressed protein -
20 Sobic.002G067800 - -


Gene co-expression network
sample Sobic004G256200 Sobic004G256200 Sobic002G341100 Sobic002G341100 Sobic004G256200--Sobic002G341100 Sobic006G261100 Sobic006G261100 Sobic004G256200--Sobic006G261100 Sobic001G116100 Sobic001G116100 Sobic004G256200--Sobic001G116100 Sobic004G250900 Sobic004G250900 Sobic004G256200--Sobic004G250900 Sobic006G120400 Sobic006G120400 Sobic004G256200--Sobic006G120400 Sobic001G218200 Sobic001G218200 Sobic004G256200--Sobic001G218200 Sobic002G276900 Sobic002G276900 Sobic004G256200--Sobic002G276900 Sobic008G073000 Sobic008G073000 Sobic004G256200--Sobic008G073000 Sobic002G095700 Sobic002G095700 Sobic004G256200--Sobic002G095700 Sobic001G033400 Sobic001G033400 Sobic002G341100--Sobic001G033400 Sobic001G041400 Sobic001G041400 Sobic002G341100--Sobic001G041400 Sobic006G278200 Sobic006G278200 Sobic002G341100--Sobic006G278200 Sobic002G341100--Sobic002G095700 Sobic002G067800 Sobic002G067800 Sobic002G341100--Sobic002G067800 Sobic003G035500 Sobic003G035500 Sobic002G341100--Sobic003G035500 Sobic002G341100--Sobic008G073000 Sobic002G341100--Sobic004G256200 Sobic002G341100--Sobic006G120400 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic001G116100--Sobic001G218200 Sobic001G116100--Sobic002G095700 Sobic001G116100--Sobic003G354100 Sobic007G188900 Sobic007G188900 Sobic001G116100--Sobic007G188900 Sobic002G177400 Sobic002G177400 Sobic001G116100--Sobic002G177400 Sobic002G362300 Sobic002G362300 Sobic001G116100--Sobic002G362300 Sobic001G346700 Sobic001G346700 Sobic001G116100--Sobic001G346700 Sobic001G116100--Sobic008G073000 Sobic004G347100 Sobic004G347100 Sobic001G116100--Sobic004G347100 Sobic004G028800 Sobic004G028800 Sobic004G250900--Sobic004G028800 Sobic001G488200 Sobic001G488200 Sobic004G250900--Sobic001G488200 Sobic007G097700 Sobic007G097700 Sobic004G250900--Sobic007G097700 Sobic004G345100 Sobic004G345100 Sobic004G250900--Sobic004G345100 Sobic004G250900--Sobic002G276900 Sobic004G250900--Sobic004G256200 Sobic006G096300 Sobic006G096300 Sobic004G250900--Sobic006G096300 Sobic009G025100 Sobic009G025100 Sobic004G250900--Sobic009G025100 Sobic009G009800 Sobic009G009800 Sobic004G250900--Sobic009G009800 Sobic009G242800 Sobic009G242800 Sobic006G120400--Sobic009G242800 Sobic006G120400--Sobic002G341100 Sobic006G203200 Sobic006G203200 Sobic006G120400--Sobic006G203200 Sobic007G155900 Sobic007G155900 Sobic006G120400--Sobic007G155900 Sobic008G015700 Sobic008G015700 Sobic006G120400--Sobic008G015700 Sobic008G106000 Sobic008G106000 Sobic006G120400--Sobic008G106000 Sobic007G043500 Sobic007G043500 Sobic006G120400--Sobic007G043500 Sobic006G120400--Sobic004G256200 Sobic002G001600 Sobic002G001600 Sobic006G120400--Sobic002G001600 Sobic001G218200--Sobic001G116100 Sobic001G218200--Sobic006G261100 Sobic005G180800 Sobic005G180800 Sobic001G218200--Sobic005G180800 Sobic001G218200--Sobic002G362300 Sobic002G103700 Sobic002G103700 Sobic001G218200--Sobic002G103700 Sobic001G218200--Sobic004G256200 Sobic005G030300 Sobic005G030300 Sobic001G218200--Sobic005G030300 Sobic002G347700 Sobic002G347700 Sobic001G218200--Sobic002G347700 Sobic001G218200--Sobic007G155900 Sobic002G276900--Sobic006G261100 Sobic006G099800 Sobic006G099800 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic010G253100 Sobic010G253100 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic008G073000--Sobic006G278200 Sobic008G165100 Sobic008G165100 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic002G095700--Sobic006G278200 Sobic002G095700--Sobic008G073000 Sobic002G095700--Sobic005G030300 Sobic002G095700--Sobic008G165100 Sobic002G095700--Sobic002G067800 Sobic003G433500 Sobic003G433500 Sobic002G095700--Sobic003G433500 Sobic002G089900 Sobic002G089900 Sobic002G095700--Sobic002G089900 Sobic002G095700--Sobic009G022100 Sobic004G078100 Sobic004G078100 Sobic002G095700--Sobic004G078100
Octagon: transcription factors


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