Gene annotation
Transcriptome id Sobic.004G346400.1
Synonym Sb04g037330
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XVX5
Pfam -
Panther DB PTHR22814 PTHR22814:SF100
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36950 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os02g57350.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
2 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
3 Sobic.003G232400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
5 Sobic.006G282300 - -
6 Sobic.003G306100 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
7 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
8 Sobic.005G142300 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
9 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
10 Sobic.003G040600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
12 Sobic.004G171700 U-box domain-containing protein, putative, expressed -
13 Sobic.010G064000 expressed protein -
14 Sobic.001G017100 late embryogenesis abundant protein, putative, expressed -
15 Sobic.002G407100 expressed protein -
16 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
17 Sobic.008G020100 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.008G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
20 Sobic.007G169900 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase


Gene co-expression network
sample Sobic004G346400 Sobic004G346400 Sobic001G322200 Sobic001G322200 Sobic004G346400--Sobic001G322200 Sobic009G248500 Sobic009G248500 Sobic004G346400--Sobic009G248500 Sobic003G232400 Sobic003G232400 Sobic004G346400--Sobic003G232400 Sobic010G052200 Sobic010G052200 Sobic004G346400--Sobic010G052200 Sobic006G282300 Sobic006G282300 Sobic004G346400--Sobic006G282300 Sobic003G306100 Sobic003G306100 Sobic004G346400--Sobic003G306100 Sobic001G464900 Sobic001G464900 Sobic004G346400--Sobic001G464900 Sobic005G142300 Sobic005G142300 Sobic004G346400--Sobic005G142300 Sobic009G027900 Sobic009G027900 Sobic004G346400--Sobic009G027900 Sobic001G322200--Sobic009G248500 Sobic004G341800 Sobic004G341800 Sobic001G322200--Sobic004G341800 Sobic001G322200--Sobic009G027900 Sobic001G267600 Sobic001G267600 Sobic001G322200--Sobic001G267600 Sobic003G228900 Sobic003G228900 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic009G248500--Sobic001G322200 Sobic009G248500--Sobic001G267600 Sobic003G037800 Sobic003G037800 Sobic009G248500--Sobic003G037800 Sobic009G248500--Sobic009G027900 Sobic002G356101 Sobic002G356101 Sobic009G248500--Sobic002G356101 Sobic001G247300 Sobic001G247300 Sobic009G248500--Sobic001G247300 Sobic009G248500--Sobic003G228900 Sobic006G066200 Sobic006G066200 Sobic009G248500--Sobic006G066200 Sobic003G093000 Sobic003G093000 Sobic009G248500--Sobic003G093000 Sobic001G111000 Sobic001G111000 Sobic003G232400--Sobic001G111000 Sobic006G057200 Sobic006G057200 Sobic003G232400--Sobic006G057200 Sobic002G385400 Sobic002G385400 Sobic003G232400--Sobic002G385400 Sobic007G150800 Sobic007G150800 Sobic003G232400--Sobic007G150800 Sobic009G232100 Sobic009G232100 Sobic003G232400--Sobic009G232100 Sobic010G070500 Sobic010G070500 Sobic003G232400--Sobic010G070500 Sobic006G278100 Sobic006G278100 Sobic003G232400--Sobic006G278100 Sobic009G173500 Sobic009G173500 Sobic003G232400--Sobic009G173500 Sobic002G128800 Sobic002G128800 Sobic003G232400--Sobic002G128800 Sobic004G212300 Sobic004G212300 Sobic010G052200--Sobic004G212300 Sobic001G084100 Sobic001G084100 Sobic010G052200--Sobic001G084100 Sobic001G532200 Sobic001G532200 Sobic010G052200--Sobic001G532200 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic006G156000 Sobic006G156000 Sobic010G052200--Sobic006G156000 Sobic002G365550 Sobic002G365550 Sobic006G282300--Sobic002G365550 Sobic004G071000 Sobic004G071000 Sobic006G282300--Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic006G282300--Sobic002G365801 Sobic006G028400 Sobic006G028400 Sobic006G282300--Sobic006G028400 Sobic008G055100 Sobic008G055100 Sobic006G282300--Sobic008G055100 Sobic010G096400 Sobic010G096400 Sobic006G282300--Sobic010G096400 Sobic010G212500 Sobic010G212500 Sobic006G282300--Sobic010G212500 Sobic003G119500 Sobic003G119500 Sobic006G282300--Sobic003G119500 Sobic007G178900 Sobic007G178900 Sobic006G282300--Sobic007G178900 Sobic001G351000 Sobic001G351000 Sobic003G306100--Sobic001G351000 Sobic003G306100--Sobic004G065500 Sobic001G034700 Sobic001G034700 Sobic003G306100--Sobic001G034700 Sobic003G285800 Sobic003G285800 Sobic003G306100--Sobic003G285800 Sobic010G041600 Sobic010G041600 Sobic003G306100--Sobic010G041600 Sobic003G150000 Sobic003G150000 Sobic003G306100--Sobic003G150000 Sobic001G477300 Sobic001G477300 Sobic003G306100--Sobic001G477300 Sobic010G086200 Sobic010G086200 Sobic003G306100--Sobic010G086200 Sobic005G168100 Sobic005G168100 Sobic003G306100--Sobic005G168100 Sobic001G464900--Sobic009G248500 Sobic001G464900--Sobic001G322200 Sobic001G464900--Sobic009G027900 Sobic006G159600 Sobic006G159600 Sobic001G464900--Sobic006G159600 Sobic005G228900 Sobic005G228900 Sobic001G464900--Sobic005G228900 Sobic001G173300 Sobic001G173300 Sobic001G464900--Sobic001G173300 Sobic007G198100 Sobic007G198100 Sobic001G464900--Sobic007G198100 Sobic001G464900--Sobic002G356101 Sobic010G065900 Sobic010G065900 Sobic001G464900--Sobic010G065900 Sobic004G042000 Sobic004G042000 Sobic005G142300--Sobic004G042000 Sobic005G142300--Sobic001G111000 Sobic005G142300--Sobic003G119500 Sobic005G142300--Sobic004G212300 Sobic005G142300--Sobic010G052200 Sobic003G311800 Sobic003G311800 Sobic005G142300--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic005G142300--Sobic009G109000 Sobic005G142300--Sobic009G232100 Sobic010G028200 Sobic010G028200 Sobic005G142300--Sobic010G028200 Sobic009G027900--Sobic009G248500 Sobic009G027900--Sobic001G322200 Sobic009G027900--Sobic006G066200 Sobic008G042900 Sobic008G042900 Sobic009G027900--Sobic008G042900 Sobic002G140300 Sobic002G140300 Sobic009G027900--Sobic002G140300 Sobic009G027900--Sobic001G532200 Sobic009G027900--Sobic001G464900 Sobic006G165100 Sobic006G165100 Sobic009G027900--Sobic006G165100 Sobic001G516600 Sobic001G516600 Sobic009G027900--Sobic001G516600
Octagon: transcription factors


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