Gene annotation
Transcriptome id Sobic.005G020700.1
Synonym Sb05g001760
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5Y3Y6
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF102
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G33110 : MATE efflux family protein
RAP-DB (Rice) LOC_Os11g03240.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053728 , Zm00025a013140
Brachypodium KQK11877 , KQJ92476 , KQJ92477 , KQJ87623
Barley HORVU0Hr1G010460.1 , HORVU0Hr1G010460.2 , HORVU5Hr1G045360.9 , HORVU5Hr1G045360.8 , HORVU5Hr1G045360.4 , HORVU5Hr1G045360.7 , HORVU5Hr1G045360.6 , HORVU5Hr1G045360.3 , HORVU5Hr1G086830.2 , HORVU5Hr1G086830.3 , HORVU5Hr1G086830.4 , HORVU5Hr1G086830.6 , HORVU5Hr1G086830.7 , HORVU5Hr1G086830.8 , HORVU5Hr1G045360.11 , HORVU5Hr1G045360.13 , HORVU5Hr1G045360.12 , HORVU5Hr1G045360.15 , HORVU5Hr1G045360.16 , HORVU5Hr1G045360.14
Wheat TraesCS5D02G355300 , TraesCS5D02G150100 , TraesCS5B02G350500 , TraesCS5B02G350400 , TraesCS4D02G123800 , TraesCS5A02G349100 , TraesCS5A02G142000 , TraesCS5A02G349000 , TraesCS5D02G355500 , TraesCS4B02G128600
Populus -


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cDNA sequences
Sobic.005G020700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
2 Sobic.004G255500 SET domain-containing protein, putative, expressed -
3 Sobic.009G131800 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
4 Sobic.009G238300 expressed protein -
5 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.002G181132 - -
7 Sobic.001G337600 expressed protein -
8 Sobic.004G309400 DCL, chloroplast precursor, putative, expressed -
9 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
10 Sobic.001G118500 - -
11 Sobic.003G069200 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
12 Sobic.004G343000 RNA recognition motif containing protein, putative, expressed -
13 Sobic.007G123600 GTPase of unknown function domain containing protein, putative, expressed K03650: mnmE, trmE, tRNA modification GTPase
14 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
15 Sobic.006G166500 expressed protein -
16 Sobic.007G165500 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
18 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
19 Sobic.006G108200 expressed protein -
20 Sobic.004G119500 peptidase, putative, expressed K03100: signal peptidase I


Gene co-expression network
sample Sobic005G020700 Sobic005G020700 Sobic001G448600 Sobic001G448600 Sobic005G020700--Sobic001G448600 Sobic004G255500 Sobic004G255500 Sobic005G020700--Sobic004G255500 Sobic009G131800 Sobic009G131800 Sobic005G020700--Sobic009G131800 Sobic009G238300 Sobic009G238300 Sobic005G020700--Sobic009G238300 Sobic001G281500 Sobic001G281500 Sobic005G020700--Sobic001G281500 Sobic002G181132 Sobic002G181132 Sobic005G020700--Sobic002G181132 Sobic001G337600 Sobic001G337600 Sobic005G020700--Sobic001G337600 Sobic004G309400 Sobic004G309400 Sobic005G020700--Sobic004G309400 Sobic004G301200 Sobic004G301200 Sobic005G020700--Sobic004G301200 Sobic001G375000 Sobic001G375000 Sobic001G448600--Sobic001G375000 Sobic001G448600--Sobic004G255500 Sobic002G140000 Sobic002G140000 Sobic001G448600--Sobic002G140000 Sobic001G448600--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic001G448600--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic001G448600--Sobic009G104700 Sobic007G015300 Sobic007G015300 Sobic001G448600--Sobic007G015300 Sobic003G128400 Sobic003G128400 Sobic001G448600--Sobic003G128400 Sobic010G027200 Sobic010G027200 Sobic001G448600--Sobic010G027200 Sobic001G099000 Sobic001G099000 Sobic004G255500--Sobic001G099000 Sobic004G255500--Sobic001G448600 Sobic005G022800 Sobic005G022800 Sobic004G255500--Sobic005G022800 Sobic004G255500--Sobic001G281500 Sobic004G255500--Sobic002G013700 Sobic004G255500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic004G255500--Sobic005G184300 Sobic004G255500--Sobic002G140000 Sobic004G255500--Sobic007G015300 Sobic001G175700 Sobic001G175700 Sobic009G131800--Sobic001G175700 Sobic004G055000 Sobic004G055000 Sobic009G131800--Sobic004G055000 Sobic002G272100 Sobic002G272100 Sobic009G131800--Sobic002G272100 Sobic004G020300 Sobic004G020300 Sobic009G131800--Sobic004G020300 Sobic004G343000 Sobic004G343000 Sobic009G131800--Sobic004G343000 Sobic001G405700 Sobic001G405700 Sobic009G131800--Sobic001G405700 Sobic008G172700 Sobic008G172700 Sobic009G131800--Sobic008G172700 Sobic003G408000 Sobic003G408000 Sobic009G131800--Sobic003G408000 Sobic002G267900 Sobic002G267900 Sobic009G131800--Sobic002G267900 Sobic003G386300 Sobic003G386300 Sobic009G238300--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic009G238300--Sobic001G122400 Sobic003G157400 Sobic003G157400 Sobic009G238300--Sobic003G157400 Sobic003G324700 Sobic003G324700 Sobic009G238300--Sobic003G324700 Sobic002G341500 Sobic002G341500 Sobic009G238300--Sobic002G341500 Sobic004G335800 Sobic004G335800 Sobic009G238300--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic009G238300--Sobic001G527100 Sobic001G240000 Sobic001G240000 Sobic009G238300--Sobic001G240000 Sobic002G353300 Sobic002G353300 Sobic009G238300--Sobic002G353300 Sobic006G237100 Sobic006G237100 Sobic001G281500--Sobic006G237100 Sobic007G116100 Sobic007G116100 Sobic001G281500--Sobic007G116100 Sobic006G107600 Sobic006G107600 Sobic001G281500--Sobic006G107600 Sobic001G281500--Sobic001G099000 Sobic001G281500--Sobic001G375000 Sobic007G171800 Sobic007G171800 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic001G281500--Sobic010G027200 Sobic001G281500--Sobic005G184300 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic003G045300 Sobic003G045300 Sobic002G181132--Sobic003G045300 Sobic004G003900 Sobic004G003900 Sobic002G181132--Sobic004G003900 Sobic002G181132--Sobic001G375000 Sobic003G162800 Sobic003G162800 Sobic002G181132--Sobic003G162800 Sobic008G090900 Sobic008G090900 Sobic002G181132--Sobic008G090900 Sobic009G092900 Sobic009G092900 Sobic002G181132--Sobic009G092900 Sobic003G345900 Sobic003G345900 Sobic002G181132--Sobic003G345900 Sobic002G156100 Sobic002G156100 Sobic002G181132--Sobic002G156100 Sobic001G337600--Sobic001G099000 Sobic001G337600--Sobic004G255500 Sobic009G055800 Sobic009G055800 Sobic001G337600--Sobic009G055800 Sobic005G036100 Sobic005G036100 Sobic001G337600--Sobic005G036100 Sobic001G337600--Sobic001G122400 Sobic001G337600--Sobic006G107600 Sobic001G337600--Sobic003G386300 Sobic003G162900 Sobic003G162900 Sobic001G337600--Sobic003G162900 Sobic003G077400 Sobic003G077400 Sobic001G337600--Sobic003G077400 Sobic007G004700 Sobic007G004700 Sobic004G309400--Sobic007G004700 Sobic004G309400--Sobic009G131800 Sobic001G083100 Sobic001G083100 Sobic004G309400--Sobic001G083100 Sobic007G205500 Sobic007G205500 Sobic004G309400--Sobic007G205500 Sobic001G413600 Sobic001G413600 Sobic004G309400--Sobic001G413600 Sobic004G309400--Sobic001G175700 Sobic004G309400--Sobic002G272100 Sobic006G021600 Sobic006G021600 Sobic004G309400--Sobic006G021600 Sobic006G067400 Sobic006G067400 Sobic004G309400--Sobic006G067400 Sobic007G208300 Sobic007G208300 Sobic004G301200--Sobic007G208300 Sobic006G091300 Sobic006G091300 Sobic004G301200--Sobic006G091300 Sobic004G055500 Sobic004G055500 Sobic004G301200--Sobic004G055500 Sobic004G144400 Sobic004G144400 Sobic004G301200--Sobic004G144400 Sobic003G085000 Sobic003G085000 Sobic004G301200--Sobic003G085000 Sobic001G424300 Sobic001G424300 Sobic004G301200--Sobic001G424300 Sobic002G424100 Sobic002G424100 Sobic004G301200--Sobic002G424100 Sobic004G301200--Sobic003G162900 Sobic003G267500 Sobic003G267500 Sobic004G301200--Sobic003G267500
Octagon: transcription factors


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