Gene annotation
Transcriptome id Sobic.005G047200.1
Synonym Sb05g003890, SbTri10
Functional annotation Trihelix Family (PubMedID : 24864043)
homeodomain, putative, expressed
UniProt A0A1Z5RGS0
Pfam PF13837
Panther DB PTHR21654 PTHR21654:SF6
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21200 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os12g06640.2 : homeodomain, putative, expressed
MaizeGDB (Corn) Zm00025a012917 , Zm00025a034169
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G047200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
2 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
3 Sobic.001G009800 N-rich protein, putative, expressed -
4 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
5 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
6 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
7 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
8 Sobic.002G300700 peptidyl-prolyl cis-trans isomerase, putative, expressed -
9 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
10 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
11 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
12 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
13 Sobic.009G231700 GTP binding protein, putative, expressed -
14 Sobic.004G198900 expressed protein -
15 Sobic.004G155600 dnaJ domain containing protein, expressed -
16 Sobic.003G083900 metallo-beta-lactamase family protein, putative, expressed -
17 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
18 Sobic.003G412300 expressed protein -
19 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
20 Sobic.005G015450 - -


Gene co-expression network
sample Sobic005G047200 Sobic005G047200 Sobic009G164000 Sobic009G164000 Sobic005G047200--Sobic009G164000 Sobic006G010000 Sobic006G010000 Sobic005G047200--Sobic006G010000 Sobic001G009800 Sobic001G009800 Sobic005G047200--Sobic001G009800 Sobic004G019600 Sobic004G019600 Sobic005G047200--Sobic004G019600 Sobic002G394800 Sobic002G394800 Sobic005G047200--Sobic002G394800 Sobic001G346300 Sobic001G346300 Sobic005G047200--Sobic001G346300 Sobic006G233300 Sobic006G233300 Sobic005G047200--Sobic006G233300 Sobic002G300700 Sobic002G300700 Sobic005G047200--Sobic002G300700 Sobic001G152000 Sobic001G152000 Sobic005G047200--Sobic001G152000 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic003G422900 Sobic003G422900 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic003G293300 Sobic003G293300 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic001G234200 Sobic001G234200 Sobic006G010000--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic006G010000--Sobic002G071000 Sobic010G193800 Sobic010G193800 Sobic001G009800--Sobic010G193800 Sobic001G009800--Sobic001G152000 Sobic006G183000 Sobic006G183000 Sobic001G009800--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic001G009800--Sobic002G268400 Sobic001G038100 Sobic001G038100 Sobic001G009800--Sobic001G038100 Sobic001G532100 Sobic001G532100 Sobic001G009800--Sobic001G532100 Sobic004G260400 Sobic004G260400 Sobic001G009800--Sobic004G260400 Sobic003G405700 Sobic003G405700 Sobic001G009800--Sobic003G405700 Sobic009G140700 Sobic009G140700 Sobic001G009800--Sobic009G140700 Sobic002G204000 Sobic002G204000 Sobic004G019600--Sobic002G204000 Sobic004G019600--Sobic001G346300 Sobic004G019600--Sobic001G114500 Sobic010G220900 Sobic010G220900 Sobic004G019600--Sobic010G220900 Sobic006G087100 Sobic006G087100 Sobic004G019600--Sobic006G087100 Sobic004G019600--Sobic001G152000 Sobic009G258400 Sobic009G258400 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic001G346300--Sobic004G019600 Sobic001G346300--Sobic006G087100 Sobic001G291800 Sobic001G291800 Sobic001G346300--Sobic001G291800 Sobic001G346300--Sobic009G258400 Sobic001G346300--Sobic010G186600 Sobic001G346300--Sobic006G010000 Sobic001G346300--Sobic001G152000 Sobic001G346300--Sobic004G212700 Sobic001G346300--Sobic006G233300 Sobic006G233300--Sobic006G010000 Sobic006G233300--Sobic002G143900 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic006G233300--Sobic002G280600 Sobic001G360200 Sobic001G360200 Sobic002G300700--Sobic001G360200 Sobic006G252700 Sobic006G252700 Sobic002G300700--Sobic006G252700 Sobic003G005200 Sobic003G005200 Sobic002G300700--Sobic003G005200 Sobic002G300700--Sobic003G422900 Sobic002G300700--Sobic009G164000 Sobic004G066200 Sobic004G066200 Sobic002G300700--Sobic004G066200 Sobic006G278700 Sobic006G278700 Sobic002G300700--Sobic006G278700 Sobic004G039600 Sobic004G039600 Sobic002G300700--Sobic004G039600 Sobic003G352200 Sobic003G352200 Sobic002G300700--Sobic003G352200 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G152000--Sobic001G009800 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000
Octagon: transcription factors


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