Gene annotation
Transcriptome id Sobic.005G066900.1
Synonym EMB2780, Sb05g005680
Functional annotation POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
UniProt C5Y6L0
Pfam PF14260 PF03104 PF00136
Panther DB PTHR10322 PTHR10322:SF23
NCBI CDD -
KEGG Orthology K02327; DNA polymerase delta subunit 1
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0003677DNA binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G63960 : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases
RAP-DB (Rice) LOC_Os11g08330.1 : POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
MaizeGDB (Corn) Zm00025a034047
Brachypodium PNT64020 , PNT64019
Barley HORVU4Hr1G017480.29 , HORVU4Hr1G017480.28 , HORVU4Hr1G017480.21 , HORVU4Hr1G017480.20 , HORVU4Hr1G017480.23 , HORVU4Hr1G017480.22 , HORVU4Hr1G017480.25 , HORVU4Hr1G017480.24 , HORVU4Hr1G017480.27 , HORVU4Hr1G017480.26 , HORVU4Hr1G017480.30 , HORVU4Hr1G017480.8 , HORVU4Hr1G017480.9 , HORVU4Hr1G017480.6 , HORVU4Hr1G017480.7 , HORVU4Hr1G017480.4 , HORVU4Hr1G017480.5 , HORVU4Hr1G017480.2 , HORVU4Hr1G017480.1 , HORVU4Hr1G017480.3 , HORVU4Hr1G017480.14 , HORVU4Hr1G017480.15 , HORVU4Hr1G017480.16 , HORVU4Hr1G017480.17 , HORVU4Hr1G017480.10 , HORVU4Hr1G017480.11 , HORVU4Hr1G017480.12 , HORVU4Hr1G017480.13 , HORVU4Hr1G017480.18 , HORVU4Hr1G017480.19
Wheat TraesCS4A02G220100 , TraesCS4D02G094700 , TraesCS4D02G094700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
2 Sobic.008G091300 PolI-like DNA polymerase, putative, expressed K02349: DNA polymerase theta
3 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
4 Sobic.003G039000 GPI transamidase component Gpi16 subunit family protein, putative, expressed K05292: GPI-anchor transamidase subunit T
5 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
6 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
7 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
8 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
9 Sobic.005G010900 expressed protein K14311: nuclear pore complex protein Nup188
10 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
11 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
12 Sobic.010G000800 PHD-finger domain containing protein, expressed -
13 Sobic.002G179400 DNA binding protein, putative, expressed -
14 Sobic.006G125500 expressed protein -
15 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
16 Sobic.004G224600 expressed protein -
17 Sobic.003G023300 Alg9-like mannosyltransferase protein, putative, expressed K03846: alpha-1,2-mannosyltransferase
18 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
19 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
20 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1


Gene co-expression network
sample Sobic005G066900 Sobic005G066900 Sobic003G143800 Sobic003G143800 Sobic005G066900--Sobic003G143800 Sobic008G091300 Sobic008G091300 Sobic005G066900--Sobic008G091300 Sobic003G375200 Sobic003G375200 Sobic005G066900--Sobic003G375200 Sobic003G039000 Sobic003G039000 Sobic005G066900--Sobic003G039000 Sobic002G371600 Sobic002G371600 Sobic005G066900--Sobic002G371600 Sobic004G322300 Sobic004G322300 Sobic005G066900--Sobic004G322300 Sobic004G315500 Sobic004G315500 Sobic005G066900--Sobic004G315500 Sobic001G248100 Sobic001G248100 Sobic005G066900--Sobic001G248100 Sobic005G010900 Sobic005G010900 Sobic005G066900--Sobic005G010900 Sobic008G124800 Sobic008G124800 Sobic003G143800--Sobic008G124800 Sobic006G021700 Sobic006G021700 Sobic003G143800--Sobic006G021700 Sobic001G015400 Sobic001G015400 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic008G092800 Sobic008G092800 Sobic003G143800--Sobic008G092800 Sobic002G340900 Sobic002G340900 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic005G114500 Sobic005G114500 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500 Sobic004G204100 Sobic004G204100 Sobic008G091300--Sobic004G204100 Sobic008G091300--Sobic003G375200 Sobic002G179400 Sobic002G179400 Sobic008G091300--Sobic002G179400 Sobic004G053500 Sobic004G053500 Sobic008G091300--Sobic004G053500 Sobic003G233400 Sobic003G233400 Sobic008G091300--Sobic003G233400 Sobic004G085000 Sobic004G085000 Sobic008G091300--Sobic004G085000 Sobic002G399800 Sobic002G399800 Sobic008G091300--Sobic002G399800 Sobic004G256500 Sobic004G256500 Sobic008G091300--Sobic004G256500 Sobic001G451300 Sobic001G451300 Sobic008G091300--Sobic001G451300 Sobic010G080700 Sobic010G080700 Sobic003G375200--Sobic010G080700 Sobic010G059500 Sobic010G059500 Sobic003G375200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic003G375200--Sobic001G145400 Sobic001G255800 Sobic001G255800 Sobic003G375200--Sobic001G255800 Sobic002G133300 Sobic002G133300 Sobic003G375200--Sobic002G133300 Sobic003G375200--Sobic002G179400 Sobic003G375200--Sobic003G039000 Sobic001G450000 Sobic001G450000 Sobic003G375200--Sobic001G450000 Sobic003G375200--Sobic008G091300 Sobic003G039000--Sobic001G255800 Sobic001G065100 Sobic001G065100 Sobic003G039000--Sobic001G065100 Sobic004G131300 Sobic004G131300 Sobic003G039000--Sobic004G131300 Sobic003G146600 Sobic003G146600 Sobic003G039000--Sobic003G146600 Sobic003G039000--Sobic003G375200 Sobic004G223300 Sobic004G223300 Sobic003G039000--Sobic004G223300 Sobic003G039000--Sobic010G080700 Sobic005G062200 Sobic005G062200 Sobic003G039000--Sobic005G062200 Sobic003G039000--Sobic002G179400 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic004G322300--Sobic002G371600 Sobic003G388000 Sobic003G388000 Sobic004G322300--Sobic003G388000 Sobic004G322300--Sobic004G315500 Sobic009G134900 Sobic009G134900 Sobic004G322300--Sobic009G134900 Sobic010G081700 Sobic010G081700 Sobic004G322300--Sobic010G081700 Sobic006G178100 Sobic006G178100 Sobic004G322300--Sobic006G178100 Sobic008G111600 Sobic008G111600 Sobic004G322300--Sobic008G111600 Sobic004G322300--Sobic002G160700 Sobic003G306400 Sobic003G306400 Sobic004G322300--Sobic003G306400 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic004G315500--Sobic005G010900 Sobic001G373000 Sobic001G373000 Sobic004G315500--Sobic001G373000 Sobic010G188000 Sobic010G188000 Sobic004G315500--Sobic010G188000 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic007G089800 Sobic007G089800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G248100--Sobic005G115500 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic005G010900--Sobic004G085000 Sobic005G010900--Sobic001G373800 Sobic010G114900 Sobic010G114900 Sobic005G010900--Sobic010G114900 Sobic005G010900--Sobic004G315500 Sobic003G199300 Sobic003G199300 Sobic005G010900--Sobic003G199300 Sobic005G010900--Sobic002G371600 Sobic008G049100 Sobic008G049100 Sobic005G010900--Sobic008G049100 Sobic006G125500 Sobic006G125500 Sobic005G010900--Sobic006G125500 Sobic005G010900--Sobic003G123100
Octagon: transcription factors


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