Gene annotation
Transcriptome id Sobic.005G213300.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6PTV7 , H0I4A2
Pfam -
Panther DB PTHR11439 PTHR11439:SF127
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os11g45320.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G213300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G121000 YDG/SRA domain containing protein, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
2 Sobic.003G088600 transcription factor X1, putative, expressed -
3 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
4 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
5 Sobic.001G137500 ankyrin, putative, expressed -
6 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
7 Sobic.002G053350 - -
8 Sobic.003G006000 expressed protein -
9 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.008G137700 XH domain containing protein, expressed -
11 Sobic.009G012400 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
13 Sobic.001G137400 ankyrin, putative, expressed -
14 Sobic.010G111750 - -
15 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
16 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
17 Sobic.001G279400 - -
18 Sobic.001G137600 ankyrin, putative, expressed -
19 Sobic.002G078900 agenet domain containing protein, expressed -
20 Sobic.009G048300 transcription factor X1, putative, expressed -


Gene co-expression network
sample Sobic005G213300 Sobic005G213300 Sobic007G121000 Sobic007G121000 Sobic005G213300--Sobic007G121000 Sobic003G088600 Sobic003G088600 Sobic005G213300--Sobic003G088600 Sobic001G288000 Sobic001G288000 Sobic005G213300--Sobic001G288000 Sobic002G178700 Sobic002G178700 Sobic005G213300--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic005G213300--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic005G213300--Sobic001G419500 Sobic002G053350 Sobic002G053350 Sobic005G213300--Sobic002G053350 Sobic003G006000 Sobic003G006000 Sobic005G213300--Sobic003G006000 Sobic002G258000 Sobic002G258000 Sobic005G213300--Sobic002G258000 Sobic007G121000--Sobic002G258000 Sobic007G121000--Sobic001G137500 Sobic007G121000--Sobic001G419500 Sobic003G091300 Sobic003G091300 Sobic007G121000--Sobic003G091300 Sobic004G024400 Sobic004G024400 Sobic007G121000--Sobic004G024400 Sobic007G121000--Sobic002G178700 Sobic007G121000--Sobic003G006000 Sobic007G121000--Sobic001G288000 Sobic001G457600 Sobic001G457600 Sobic007G121000--Sobic001G457600 Sobic008G137700 Sobic008G137700 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic003G088600--Sobic010G194600 Sobic006G271600 Sobic006G271600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic003G088600--Sobic002G178700 Sobic001G137400 Sobic001G137400 Sobic001G288000--Sobic001G137400 Sobic001G288000--Sobic001G137500 Sobic001G288000--Sobic003G091300 Sobic001G288000--Sobic002G258000 Sobic007G193300 Sobic007G193300 Sobic001G288000--Sobic007G193300 Sobic002G299200 Sobic002G299200 Sobic001G288000--Sobic002G299200 Sobic001G288000--Sobic003G006000 Sobic001G288000--Sobic002G178700 Sobic001G288000--Sobic001G419500 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic002G178700--Sobic001G137500 Sobic002G178700--Sobic003G088600 Sobic009G063700 Sobic009G063700 Sobic002G178700--Sobic009G063700 Sobic002G078900 Sobic002G078900 Sobic002G178700--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic002G178700--Sobic001G459400 Sobic002G178700--Sobic008G137700 Sobic003G300000 Sobic003G300000 Sobic002G178700--Sobic003G300000 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic004G234600 Sobic004G234600 Sobic002G053350--Sobic004G234600 Sobic002G053350--Sobic003G088600 Sobic002G053350--Sobic008G137700 Sobic007G128200 Sobic007G128200 Sobic002G053350--Sobic007G128200 Sobic002G053350--Sobic001G216400 Sobic002G053350--Sobic001G419500 Sobic002G053350--Sobic010G194600 Sobic002G053350--Sobic007G193300 Sobic002G053350--Sobic001G137500 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic009G243000 Sobic009G243000 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic003G006000--Sobic001G457600 Sobic002G258000--Sobic001G137500 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic002G258000--Sobic001G137400 Sobic002G258000--Sobic003G006000 Sobic002G258000--Sobic009G243000 Sobic002G258000--Sobic007G193300 Sobic002G258000--Sobic010G194600 Sobic002G258000--Sobic002G178700
Octagon: transcription factors


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