Gene annotation
Transcriptome id Sobic.006G011200.1
Synonym Sb06g001120, PDH-E1ALPHA
Functional annotation dehydrogenase E1 component domain containing protein, expressed
UniProt C5YBS3
Pfam PF02775
Panther DB PTHR11516 PTHR11516:SF25
NCBI CDD KOG0225; Pyruvate dehydrogenase E1, alpha subunit
KEGG Orthology K00161; PDHA, pyruvate dehydrogenase E1 component alpha subunit
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G01090 : pyruvate dehydrogenase E1 alpha
RAP-DB (Rice) LOC_Os04g02900.1 : dehydrogenase E1 component domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012252
Brachypodium PNT60545 , KQJ81560
Barley HORVU2Hr1G001600.1 , HORVU2Hr1G001600.3 , HORVU2Hr1G001600.2
Wheat TraesCS2B02G012500 , TraesCS2D02G010700 , TraesCS2D02G010700 , TraesCS2A02G010100
Populus -


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cDNA sequences
Sobic.006G011200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2
2 Sobic.001G300900 expansin precursor, putative, expressed -
3 Sobic.010G202500 C2 domain containing protein, putative, expressed -
4 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
5 Sobic.005G132400 lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
6 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
7 Sobic.008G173000 transketolase, putative, expressed K00162: PDHB, pyruvate dehydrogenase E1 component beta subunit
8 Sobic.002G356600 ZCW7, putative, expressed -
9 Sobic.003G209400 expressed protein -
10 Sobic.009G101000 - -
11 Sobic.002G144275 - -
12 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
13 Sobic.004G247100 peptidase, putative, expressed -
14 Sobic.007G070000 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
15 Sobic.005G155300 BSD domain-containing protein, putative, expressed -
16 Sobic.001G168100 OsFBD13 - F-box and FBD domain containing protein, expressed -
17 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
18 Sobic.002G227200 AGAP010609-PA, putative, expressed K17867: DPH4, diphthamide biosynthesis protein 4
19 Sobic.003G436600 expressed protein -
20 Sobic.002G309200 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic006G011200 Sobic006G011200 Sobic010G239800 Sobic010G239800 Sobic006G011200--Sobic010G239800 Sobic001G300900 Sobic001G300900 Sobic006G011200--Sobic001G300900 Sobic010G202500 Sobic010G202500 Sobic006G011200--Sobic010G202500 Sobic003G273400 Sobic003G273400 Sobic006G011200--Sobic003G273400 Sobic005G132400 Sobic005G132400 Sobic006G011200--Sobic005G132400 Sobic006G233300 Sobic006G233300 Sobic006G011200--Sobic006G233300 Sobic008G173000 Sobic008G173000 Sobic006G011200--Sobic008G173000 Sobic002G356600 Sobic002G356600 Sobic006G011200--Sobic002G356600 Sobic003G209400 Sobic003G209400 Sobic006G011200--Sobic003G209400 Sobic003G099300 Sobic003G099300 Sobic010G239800--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic010G239800--Sobic007G027700 Sobic010G085200 Sobic010G085200 Sobic010G239800--Sobic010G085200 Sobic010G269100 Sobic010G269100 Sobic010G239800--Sobic010G269100 Sobic010G239800--Sobic006G233300 Sobic010G232900 Sobic010G232900 Sobic010G239800--Sobic010G232900 Sobic010G279700 Sobic010G279700 Sobic010G239800--Sobic010G279700 Sobic008G092300 Sobic008G092300 Sobic010G239800--Sobic008G092300 Sobic002G145800 Sobic002G145800 Sobic010G239800--Sobic002G145800 Sobic002G162500 Sobic002G162500 Sobic001G300900--Sobic002G162500 Sobic006G208400 Sobic006G208400 Sobic001G300900--Sobic006G208400 Sobic006G269800 Sobic006G269800 Sobic001G300900--Sobic006G269800 Sobic003G361400 Sobic003G361400 Sobic001G300900--Sobic003G361400 Sobic004G119400 Sobic004G119400 Sobic001G300900--Sobic004G119400 Sobic007G011600 Sobic007G011600 Sobic001G300900--Sobic007G011600 Sobic008G088842 Sobic008G088842 Sobic001G300900--Sobic008G088842 Sobic003G341700 Sobic003G341700 Sobic001G300900--Sobic003G341700 Sobic008G017100 Sobic008G017100 Sobic001G300900--Sobic008G017100 Sobic010G202500--Sobic010G239800 Sobic010G202500--Sobic010G085200 Sobic002G280600 Sobic002G280600 Sobic010G202500--Sobic002G280600 Sobic010G202500--Sobic006G233300 Sobic002G394800 Sobic002G394800 Sobic010G202500--Sobic002G394800 Sobic010G202500--Sobic007G027700 Sobic006G252100 Sobic006G252100 Sobic010G202500--Sobic006G252100 Sobic002G357100 Sobic002G357100 Sobic010G202500--Sobic002G357100 Sobic007G191700 Sobic007G191700 Sobic010G202500--Sobic007G191700 Sobic008G137600 Sobic008G137600 Sobic003G273400--Sobic008G137600 Sobic001G532100 Sobic001G532100 Sobic003G273400--Sobic001G532100 Sobic001G207500 Sobic001G207500 Sobic003G273400--Sobic001G207500 Sobic002G306400 Sobic002G306400 Sobic003G273400--Sobic002G306400 Sobic001G294900 Sobic001G294900 Sobic003G273400--Sobic001G294900 Sobic002G341800 Sobic002G341800 Sobic003G273400--Sobic002G341800 Sobic006G109700 Sobic006G109700 Sobic003G273400--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic003G273400--Sobic002G268400 Sobic003G273400--Sobic002G280600 Sobic002G155100 Sobic002G155100 Sobic005G132400--Sobic002G155100 Sobic005G132400--Sobic004G119400 Sobic002G079100 Sobic002G079100 Sobic005G132400--Sobic002G079100 Sobic004G354000 Sobic004G354000 Sobic005G132400--Sobic004G354000 Sobic009G213100 Sobic009G213100 Sobic005G132400--Sobic009G213100 Sobic002G127400 Sobic002G127400 Sobic005G132400--Sobic002G127400 Sobic007G070000 Sobic007G070000 Sobic005G132400--Sobic007G070000 Sobic003G267000 Sobic003G267000 Sobic005G132400--Sobic003G267000 Sobic006G002400 Sobic006G002400 Sobic005G132400--Sobic006G002400 Sobic006G010000 Sobic006G010000 Sobic006G233300--Sobic006G010000 Sobic002G143900 Sobic002G143900 Sobic006G233300--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic006G233300--Sobic002G394800 Sobic006G233300--Sobic003G099300 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic006G233300--Sobic002G280600 Sobic001G226100 Sobic001G226100 Sobic008G173000--Sobic001G226100 Sobic010G012600 Sobic010G012600 Sobic008G173000--Sobic010G012600 Sobic008G173000--Sobic006G252100 Sobic001G296400 Sobic001G296400 Sobic008G173000--Sobic001G296400 Sobic004G185600 Sobic004G185600 Sobic008G173000--Sobic004G185600 Sobic010G251100 Sobic010G251100 Sobic008G173000--Sobic010G251100 Sobic001G263000 Sobic001G263000 Sobic008G173000--Sobic001G263000 Sobic003G045400 Sobic003G045400 Sobic008G173000--Sobic003G045400 Sobic006G216000 Sobic006G216000 Sobic008G173000--Sobic006G216000 Sobic007G134100 Sobic007G134100 Sobic002G356600--Sobic007G134100 Sobic002G356600--Sobic004G354000 Sobic002G356600--Sobic003G209400 Sobic006G271700 Sobic006G271700 Sobic002G356600--Sobic006G271700 Sobic002G309200 Sobic002G309200 Sobic002G356600--Sobic002G309200 Sobic004G034700 Sobic004G034700 Sobic002G356600--Sobic004G034700 Sobic002G412700 Sobic002G412700 Sobic002G356600--Sobic002G412700 Sobic002G356600--Sobic008G017100 Sobic009G151800 Sobic009G151800 Sobic002G356600--Sobic009G151800 Sobic009G007700 Sobic009G007700 Sobic003G209400--Sobic009G007700 Sobic003G209400--Sobic002G412700 Sobic006G112700 Sobic006G112700 Sobic003G209400--Sobic006G112700 Sobic003G209400--Sobic010G085200 Sobic008G080500 Sobic008G080500 Sobic003G209400--Sobic008G080500 Sobic007G097400 Sobic007G097400 Sobic003G209400--Sobic007G097400 Sobic003G209400--Sobic004G034700 Sobic003G209400--Sobic008G017100 Sobic003G209400--Sobic002G356600
Octagon: transcription factors


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