Gene annotation
| Transcriptome id | Sobic.006G048700.1 |
|---|---|
| Synonym | SSI2, FAB2, Sb06g012520, |
| Functional annotation | "fatty acid desaturase, up-regulated under severe drought stress" (PubMedID : 24655390) Acyl-acyl-carrier-protein desaturase (Os) (PubMedID : 27208977) acyl-desaturase, chloroplast precursor, putative, expressed |
| UniProt | C5YED4 |
| Pfam | PF03405 |
| Panther DB | PTHR31155 PTHR31155:SF11 |
| NCBI CDD | - |
| KEGG Orthology | K03921; FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase |
| Gene Ontology | GO:0006631; fatty acid metabolic process |
Orthologs (automatic annotation)
| TAIR | AT2G43710 : Plant stearoyl-acyl-carrier-protein desaturase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g31070.1 : acyl-desaturase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a055823 , Zm00025a011820 |
| Brachypodium | KQJ99564 , KQJ82217 |
| Barley | HORVU2Hr1G068670.3 , HORVU2Hr1G068670.2 , HORVU2Hr1G068670.5 , HORVU2Hr1G068670.4 , HORVU2Hr1G068670.7 , HORVU2Hr1G068670.6 , HORVU2Hr1G068670.9 , HORVU2Hr1G068670.8 |
| Wheat | TraesCS2B02G298000 , TraesCS2A02G280700 , TraesCS2A02G280700 , TraesCS2D02G279500 , TraesCS2D02G279500 , TraesCS5D02G131500 |
| Populus | PNT17213 , PNT17212 , PNT17211 , PNT23364 |
JBrowse
| Sobic.006G048700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G149500 | palmitoyltransferase TIP1, putative, expressed | K18932: palmitoyltransferase |
| 2 | Sobic.009G040700 | "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed | K01090: protein phosphatase |
| 3 | Sobic.003G187400 | - | K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2 |
| 4 | Sobic.003G008500 | VHS and GAT domain containing protein, expressed | - |
| 5 | Sobic.009G022200 | Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed | K12896: splicing factor, arginine/serine-rich 7 |
| 6 | Sobic.006G173100 | pre-mRNA-processing factor 31, putative, expressed | K12844: U4/U6 small nuclear ribonucleoprotein PRP31 |
| 7 | Sobic.007G011400 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 8 | Sobic.004G270000 | coatomer subunit delta, putative, expressed | - |
| 9 | Sobic.002G165300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | K11111: TERF2, telomeric repeat-binding factor 2 |
| 10 | Sobic.006G060100 | glutaredoxin, putative, expressed | K17479: glutaredoxin domain-containing cysteine-rich protein 1 |
| 11 | Sobic.003G239900 | ketol-acid reductoisomerase, chloroplast precursor, putative, expressed | K00053: ketol-acid reductoisomerase |
| 12 | Sobic.002G157300 | Ser/Thr protein phosphatase family protein, putative, expressed | K15423: serine/threonine-protein phosphatase 4 catalytic subunit |
| 13 | Sobic.001G168400 | similar to Serine/threonine-protein kinase SAPK10(PubMedID : 29862293)@CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K14498: serine/threonine-protein kinase SRK2 |
| 14 | Sobic.010G026400 | BUD13, putative, expressed | K13106: BUD13, pre-mRNA-splicing factor CWC26 |
| 15 | Sobic.003G176400 | - | - |
| 16 | Sobic.002G197100 | RAD23 DNA repair protein, putative, expressed | K10839: RAD23, UV excision repair protein RAD23 |
| 17 | Sobic.001G090400 | PHD-finger domain containing protein, putative, expressed | K11346: inhibitor of growth protein 4 |
| 18 | Sobic.001G094000 | expressed protein | - |
| 19 | Sobic.006G045700 | - | - |
| 20 | Sobic.001G544200 | endonuclease, putative, expressed | K10848: ERCC4, DNA excision repair protein ERCC-4 |
Gene co-expression network
Octagon: transcription factors
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