Gene annotation
Transcriptome id Sobic.006G219300.1,Sobic.006G219300.2
Synonym EST4, MRP2, Sb06g028880, ATMRP2
Functional annotation ABC transporter family protein, putative, expressed
UniProt C5YG52 , H0I498
Pfam PF00005 PF00664
Panther DB PTHR24223 PTHR24223:SF251
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT2G34660 : multidrug resistance-associated protein 2
RAP-DB (Rice) LOC_Os04g52900.1 : ABC transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028285 , Zm00025a009735
Brachypodium PNT61872 , PNT61873 , PNT61870 , PNT61871 , KQJ84654
Barley HORVU2Hr1G103620.3 , HORVU2Hr1G103620.6 , HORVU2Hr1G103620.4 , HORVU2Hr1G103620.5 , HORVU2Hr1G103620.1 , HORVU2Hr1G103620.2
Wheat TraesCS2B02G485600 , TraesCS2D02G464800 , TraesCS1A02G404300 , TraesCS1B02G433800 , TraesCS2A02G463900
Populus PNT39377 , PNT39378


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G290000 OsSub19 - Putative Subtilisin homologue, expressed K01280: tripeptidyl-peptidase II
2 Sobic.004G023100 protein binding protein, putative, expressed -
3 Sobic.001G203400 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
4 Sobic.006G265200 zinc finger, RING-type, putative, expressed K17592: sacsin
5 Sobic.004G253100 armadillo/beta-catenin repeat family protein, putative, expressed -
6 Sobic.001G004400 - K14290: XPO1, exportin-1
7 Sobic.004G260100 tetratricopeptide repeat, putative, expressed K03255: TIF31, protein TIF31
8 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
10 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
11 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
12 Sobic.004G040500 expressed protein -
13 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
14 Sobic.004G176000 "SDG725(Ortholog in rice:Sui et al., 2012)"(PubMedID : 31659884)@histone-lysine N-methyltransferase ASHH2, putative, expressed -
15 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
16 Sobic.008G132900 expressed protein -
17 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
18 Sobic.004G337800 UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed K11718: UDP-glucose:glycoprotein glucosyltransferase
19 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
20 Sobic.003G017400 phosphoacetylglucosamine mutase, putative, expressed K01836: phosphoacetylglucosamine mutase


Gene co-expression network
sample Sobic006G219300 Sobic006G219300 Sobic004G290000 Sobic004G290000 Sobic006G219300--Sobic004G290000 Sobic004G023100 Sobic004G023100 Sobic006G219300--Sobic004G023100 Sobic001G203400 Sobic001G203400 Sobic006G219300--Sobic001G203400 Sobic006G265200 Sobic006G265200 Sobic006G219300--Sobic006G265200 Sobic004G253100 Sobic004G253100 Sobic006G219300--Sobic004G253100 Sobic001G004400 Sobic001G004400 Sobic006G219300--Sobic001G004400 Sobic004G260100 Sobic004G260100 Sobic006G219300--Sobic004G260100 Sobic003G221400 Sobic003G221400 Sobic006G219300--Sobic003G221400 Sobic005G187300 Sobic005G187300 Sobic006G219300--Sobic005G187300 Sobic004G290000--Sobic006G219300 Sobic008G004300 Sobic008G004300 Sobic004G290000--Sobic008G004300 Sobic004G290000--Sobic004G253100 Sobic004G290000--Sobic004G023100 Sobic002G166300 Sobic002G166300 Sobic004G290000--Sobic002G166300 Sobic004G290000--Sobic001G004400 Sobic005G096400 Sobic005G096400 Sobic004G290000--Sobic005G096400 Sobic009G139900 Sobic009G139900 Sobic004G290000--Sobic009G139900 Sobic002G428800 Sobic002G428800 Sobic004G290000--Sobic002G428800 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic002G397500 Sobic002G397500 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic009G109200 Sobic009G109200 Sobic004G023100--Sobic009G109200 Sobic001G287500 Sobic001G287500 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100 Sobic001G203400--Sobic005G187300 Sobic001G085600 Sobic001G085600 Sobic001G203400--Sobic001G085600 Sobic001G203400--Sobic004G023100 Sobic010G094900 Sobic010G094900 Sobic001G203400--Sobic010G094900 Sobic001G261545 Sobic001G261545 Sobic001G203400--Sobic001G261545 Sobic003G196300 Sobic003G196300 Sobic001G203400--Sobic003G196300 Sobic006G219600 Sobic006G219600 Sobic001G203400--Sobic006G219600 Sobic005G059800 Sobic005G059800 Sobic001G203400--Sobic005G059800 Sobic010G032900 Sobic010G032900 Sobic001G203400--Sobic010G032900 Sobic007G098500 Sobic007G098500 Sobic006G265200--Sobic007G098500 Sobic008G092600 Sobic008G092600 Sobic006G265200--Sobic008G092600 Sobic010G105200 Sobic010G105200 Sobic006G265200--Sobic010G105200 Sobic001G117200 Sobic001G117200 Sobic006G265200--Sobic001G117200 Sobic006G265200--Sobic001G287500 Sobic002G147600 Sobic002G147600 Sobic006G265200--Sobic002G147600 Sobic006G265200--Sobic004G040500 Sobic007G163100 Sobic007G163100 Sobic006G265200--Sobic007G163100 Sobic003G233400 Sobic003G233400 Sobic006G265200--Sobic003G233400 Sobic001G540800 Sobic001G540800 Sobic004G253100--Sobic001G540800 Sobic006G000700 Sobic006G000700 Sobic004G253100--Sobic006G000700 Sobic004G253100--Sobic004G290000 Sobic004G253100--Sobic004G023100 Sobic010G053600 Sobic010G053600 Sobic004G253100--Sobic010G053600 Sobic004G144400 Sobic004G144400 Sobic004G253100--Sobic004G144400 Sobic009G002300 Sobic009G002300 Sobic004G253100--Sobic009G002300 Sobic004G176000 Sobic004G176000 Sobic004G253100--Sobic004G176000 Sobic008G082500 Sobic008G082500 Sobic004G253100--Sobic008G082500 Sobic002G133300 Sobic002G133300 Sobic001G004400--Sobic002G133300 Sobic001G110600 Sobic001G110600 Sobic001G004400--Sobic001G110600 Sobic007G054800 Sobic007G054800 Sobic001G004400--Sobic007G054800 Sobic004G248600 Sobic004G248600 Sobic001G004400--Sobic004G248600 Sobic003G312100 Sobic003G312100 Sobic001G004400--Sobic003G312100 Sobic001G493700 Sobic001G493700 Sobic001G004400--Sobic001G493700 Sobic001G004400--Sobic003G221400 Sobic004G276400 Sobic004G276400 Sobic001G004400--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G004400--Sobic002G179400 Sobic001G214600 Sobic001G214600 Sobic004G260100--Sobic001G214600 Sobic009G084900 Sobic009G084900 Sobic004G260100--Sobic009G084900 Sobic004G260100--Sobic002G397500 Sobic001G089600 Sobic001G089600 Sobic004G260100--Sobic001G089600 Sobic001G493200 Sobic001G493200 Sobic004G260100--Sobic001G493200 Sobic001G334700 Sobic001G334700 Sobic004G260100--Sobic001G334700 Sobic010G147833 Sobic010G147833 Sobic004G260100--Sobic010G147833 Sobic004G260100--Sobic004G023100 Sobic004G260100--Sobic010G053600 Sobic003G221400--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic003G221400--Sobic005G162500 Sobic003G221400--Sobic001G493700 Sobic003G221400--Sobic001G110600 Sobic003G221400--Sobic001G004400 Sobic001G333100 Sobic001G333100 Sobic003G221400--Sobic001G333100 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic003G221400--Sobic008G085300 Sobic004G001500 Sobic004G001500 Sobic005G187300--Sobic004G001500 Sobic005G187300--Sobic003G196300 Sobic002G146300 Sobic002G146300 Sobic005G187300--Sobic002G146300 Sobic005G187300--Sobic004G291900 Sobic005G187300--Sobic001G192000 Sobic005G187300--Sobic006G219600 Sobic005G187300--Sobic001G542500 Sobic005G187300--Sobic008G085300 Sobic009G256400 Sobic009G256400 Sobic005G187300--Sobic009G256400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.