Gene annotation
Transcriptome id Sobic.006G270400.1
Synonym Sb06g033190
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
choline transporter-related, putative, expressed
UniProt C5YAL9
Pfam PF04515
Panther DB PTHR12385 PTHR12385:SF47
NCBI CDD KOG1362; Choline transporter-like protein
KEGG Orthology K15377; solute carrier family 44 (choline transporter-like protein), member 2/4/5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15380 : Plasma-membrane choline transporter family protein
RAP-DB (Rice) LOC_Os04g58470.1 : choline transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a009265
Brachypodium KQJ85342 , KQJ94749 , KQJ85341
Barley HORVU7Hr1G078730.12 , HORVU7Hr1G078730.13 , HORVU7Hr1G078730.10 , HORVU7Hr1G078730.11 , HORVU7Hr1G078730.16 , HORVU7Hr1G078730.17 , HORVU7Hr1G078730.14 , HORVU7Hr1G078730.15 , HORVU2Hr1G122730.9 , HORVU2Hr1G122730.8 , HORVU7Hr1G078730.18 , HORVU2Hr1G122730.15 , HORVU2Hr1G122730.14 , HORVU2Hr1G122730.17 , HORVU2Hr1G122730.16 , HORVU2Hr1G122730.11 , HORVU2Hr1G122730.10 , HORVU2Hr1G122730.13 , HORVU2Hr1G122730.12 , HORVU2Hr1G122730.19 , HORVU2Hr1G122730.18 , HORVU2Hr1G122730.3 , HORVU2Hr1G122730.2 , HORVU2Hr1G122730.5 , HORVU2Hr1G122730.4 , HORVU2Hr1G122730.7 , HORVU2Hr1G122730.6 , HORVU7Hr1G078730.8 , HORVU7Hr1G078730.9 , HORVU7Hr1G078730.3
Wheat TraesCS7B02G229800 , TraesCS7B02G229800 , TraesCS7A02G329100 , TraesCS7A02G329100 , TraesCS7A02G329100 , TraesCS2A02G585800 , TraesCS2B02G597400 , TraesCS2A02G585800 , TraesCS2D02G600700 , TraesCS2D02G600700 , TraesCS7D02G326000 , TraesCS7D02G326000
Populus -


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cDNA sequences
Sobic.006G270400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295900 AGC_PVPK_like_kin82y.17 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.002G412400 heavy metal-associated domain containing protein, expressed -
3 Sobic.006G147900 expressed protein -
4 Sobic.002G221400 ZOS9-14 - C2H2 zinc finger protein, expressed -
5 Sobic.010G189800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
6 Sobic.006G108000 formin, putative, expressed -
7 Sobic.001G509800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cysteine-rich repeat secretory protein precursor, putative, expressed -
8 Sobic.001G273100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
10 Sobic.006G163600 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.001G230400 pectate lyase precursor, putative, expressed K01728: pectate lyase
12 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
13 Sobic.006G245200 OsFBX239 - F-box domain containing protein, expressed -
14 Sobic.003G301200 expressed protein -
15 Sobic.004G300500 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
17 Sobic.006G122300 glycosyl hydrolase family 5 protein, putative, expressed -
18 Sobic.001G180300 expressed protein -
19 Sobic.003G387300 ABC-2 type transporter domain containing protein, expressed -
20 Sobic.004G287500 expressed protein -


Gene co-expression network
sample Sobic006G270400 Sobic006G270400 Sobic001G295900 Sobic001G295900 Sobic006G270400--Sobic001G295900 Sobic002G412400 Sobic002G412400 Sobic006G270400--Sobic002G412400 Sobic006G147900 Sobic006G147900 Sobic006G270400--Sobic006G147900 Sobic002G221400 Sobic002G221400 Sobic006G270400--Sobic002G221400 Sobic010G189800 Sobic010G189800 Sobic006G270400--Sobic010G189800 Sobic006G108000 Sobic006G108000 Sobic006G270400--Sobic006G108000 Sobic001G509800 Sobic001G509800 Sobic006G270400--Sobic001G509800 Sobic001G273100 Sobic001G273100 Sobic006G270400--Sobic001G273100 Sobic007G081300 Sobic007G081300 Sobic006G270400--Sobic007G081300 Sobic006G005000 Sobic006G005000 Sobic001G295900--Sobic006G005000 Sobic001G295900--Sobic007G081300 Sobic004G300500 Sobic004G300500 Sobic001G295900--Sobic004G300500 Sobic001G180300 Sobic001G180300 Sobic001G295900--Sobic001G180300 Sobic003G230300 Sobic003G230300 Sobic001G295900--Sobic003G230300 Sobic004G192700 Sobic004G192700 Sobic001G295900--Sobic004G192700 Sobic004G344301 Sobic004G344301 Sobic001G295900--Sobic004G344301 Sobic010G074980 Sobic010G074980 Sobic001G295900--Sobic010G074980 Sobic002G263900 Sobic002G263900 Sobic001G295900--Sobic002G263900 Sobic003G325400 Sobic003G325400 Sobic002G412400--Sobic003G325400 Sobic002G202500 Sobic002G202500 Sobic002G412400--Sobic002G202500 Sobic009G070500 Sobic009G070500 Sobic002G412400--Sobic009G070500 Sobic004G336700 Sobic004G336700 Sobic002G412400--Sobic004G336700 Sobic003G047200 Sobic003G047200 Sobic002G412400--Sobic003G047200 Sobic009G195600 Sobic009G195600 Sobic002G412400--Sobic009G195600 Sobic002G412400--Sobic001G273100 Sobic010G246500 Sobic010G246500 Sobic002G412400--Sobic010G246500 Sobic007G000500 Sobic007G000500 Sobic002G412400--Sobic007G000500 Sobic004G108400 Sobic004G108400 Sobic006G147900--Sobic004G108400 Sobic006G147900--Sobic002G221400 Sobic004G266800 Sobic004G266800 Sobic006G147900--Sobic004G266800 Sobic004G313900 Sobic004G313900 Sobic006G147900--Sobic004G313900 Sobic004G329000 Sobic004G329000 Sobic006G147900--Sobic004G329000 Sobic003G251700 Sobic003G251700 Sobic006G147900--Sobic003G251700 Sobic002G286100 Sobic002G286100 Sobic006G147900--Sobic002G286100 Sobic009G257900 Sobic009G257900 Sobic006G147900--Sobic009G257900 Sobic006G163600 Sobic006G163600 Sobic006G147900--Sobic006G163600 Sobic002G221400--Sobic006G108000 Sobic004G115600 Sobic004G115600 Sobic002G221400--Sobic004G115600 Sobic002G221400--Sobic004G266800 Sobic002G221400--Sobic006G163600 Sobic002G221400--Sobic006G147900 Sobic006G278400 Sobic006G278400 Sobic002G221400--Sobic006G278400 Sobic003G406500 Sobic003G406500 Sobic002G221400--Sobic003G406500 Sobic003G301200 Sobic003G301200 Sobic002G221400--Sobic003G301200 Sobic001G331100 Sobic001G331100 Sobic002G221400--Sobic001G331100 Sobic010G189800--Sobic007G081300 Sobic010G189800--Sobic004G192700 Sobic003G092200 Sobic003G092200 Sobic010G189800--Sobic003G092200 Sobic006G187600 Sobic006G187600 Sobic010G189800--Sobic006G187600 Sobic010G073300 Sobic010G073300 Sobic010G189800--Sobic010G073300 Sobic007G149600 Sobic007G149600 Sobic010G189800--Sobic007G149600 Sobic004G227000 Sobic004G227000 Sobic010G189800--Sobic004G227000 Sobic010G189800--Sobic003G301200 Sobic001G441800 Sobic001G441800 Sobic010G189800--Sobic001G441800 Sobic006G108000--Sobic003G406500 Sobic006G108000--Sobic001G331100 Sobic006G108000--Sobic004G115600 Sobic008G163800 Sobic008G163800 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic006G108000--Sobic002G221400 Sobic009G254400 Sobic009G254400 Sobic006G108000--Sobic009G254400 Sobic003G040100 Sobic003G040100 Sobic006G108000--Sobic003G040100 Sobic007G153300 Sobic007G153300 Sobic006G108000--Sobic007G153300 Sobic004G130001 Sobic004G130001 Sobic001G509800--Sobic004G130001 Sobic003G342800 Sobic003G342800 Sobic001G509800--Sobic003G342800 Sobic004G162600 Sobic004G162600 Sobic001G509800--Sobic004G162600 Sobic004G244500 Sobic004G244500 Sobic001G509800--Sobic004G244500 Sobic007G193500 Sobic007G193500 Sobic001G509800--Sobic007G193500 Sobic010G196200 Sobic010G196200 Sobic001G509800--Sobic010G196200 Sobic006G069400 Sobic006G069400 Sobic001G509800--Sobic006G069400 Sobic001G086100 Sobic001G086100 Sobic001G509800--Sobic001G086100 Sobic001G003300 Sobic001G003300 Sobic001G509800--Sobic001G003300 Sobic006G177000 Sobic006G177000 Sobic001G273100--Sobic006G177000 Sobic001G273100--Sobic004G336700 Sobic010G191100 Sobic010G191100 Sobic001G273100--Sobic010G191100 Sobic001G534300 Sobic001G534300 Sobic001G273100--Sobic001G534300 Sobic001G273100--Sobic006G163600 Sobic001G273100--Sobic002G202500 Sobic001G273100--Sobic002G412400 Sobic002G229800 Sobic002G229800 Sobic001G273100--Sobic002G229800 Sobic001G273100--Sobic003G325400 Sobic007G081300--Sobic003G301200 Sobic007G081300--Sobic006G278400 Sobic007G081300--Sobic010G189800 Sobic007G081300--Sobic001G180300 Sobic007G081300--Sobic003G092200 Sobic007G081300--Sobic004G227000 Sobic007G081300--Sobic007G149600 Sobic007G081300--Sobic006G187600 Sobic007G081300--Sobic006G005000
Octagon: transcription factors


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