Gene annotation
Transcriptome id Sobic.007G051900.2
Synonym Sb07g004200
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5R862
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF588
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07590 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g06500.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a055095
Brachypodium KQJ95282
Barley HORVU7Hr1G066420.3 , HORVU7Hr1G066420.2 , HORVU7Hr1G066420.1 , HORVU7Hr1G066420.7 , HORVU7Hr1G066420.6 , HORVU7Hr1G066420.5 , HORVU7Hr1G066420.4
Wheat TraesCS7B02G189100 , TraesCS7D02G293300 , TraesCS7A02G296400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G294300 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
2 Sobic.001G193100 expressed protein -
3 Sobic.003G119700 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.006G281700 DUF803 domain containing, putative, expressed -
5 Sobic.010G074900 G protein coupled receptor, putative, expressed -
6 Sobic.009G226400 dynamin family protein, putative, expressed -
7 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
9 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
10 Sobic.001G122000 oxysterol-binding protein, putative, expressed -
11 Sobic.003G273500 expressed protein -
12 Sobic.006G204800 APO, putative, expressed -
13 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
14 Sobic.002G115500 PHD finger protein, putative, expressed -
15 Sobic.003G205501 - -
16 Sobic.003G214300 expressed protein -
17 Sobic.003G392550 - -
18 Sobic.001G420800 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
19 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.010G232900 surp module family protein, putative, expressed -


Gene co-expression network
sample Sobic007G051900 Sobic007G051900 Sobic001G294300 Sobic001G294300 Sobic007G051900--Sobic001G294300 Sobic001G193100 Sobic001G193100 Sobic007G051900--Sobic001G193100 Sobic003G119700 Sobic003G119700 Sobic007G051900--Sobic003G119700 Sobic006G281700 Sobic006G281700 Sobic007G051900--Sobic006G281700 Sobic010G074900 Sobic010G074900 Sobic007G051900--Sobic010G074900 Sobic009G226400 Sobic009G226400 Sobic007G051900--Sobic009G226400 Sobic003G314300 Sobic003G314300 Sobic007G051900--Sobic003G314300 Sobic006G091000 Sobic006G091000 Sobic007G051900--Sobic006G091000 Sobic006G142400 Sobic006G142400 Sobic007G051900--Sobic006G142400 Sobic001G294300--Sobic003G119700 Sobic010G235200 Sobic010G235200 Sobic001G294300--Sobic010G235200 Sobic002G056701 Sobic002G056701 Sobic001G294300--Sobic002G056701 Sobic004G316700 Sobic004G316700 Sobic001G294300--Sobic004G316700 Sobic006G219000 Sobic006G219000 Sobic001G294300--Sobic006G219000 Sobic008G124900 Sobic008G124900 Sobic001G294300--Sobic008G124900 Sobic001G441400 Sobic001G441400 Sobic001G294300--Sobic001G441400 Sobic010G275400 Sobic010G275400 Sobic001G294300--Sobic010G275400 Sobic001G294300--Sobic006G281700 Sobic010G223400 Sobic010G223400 Sobic001G193100--Sobic010G223400 Sobic003G394200 Sobic003G394200 Sobic001G193100--Sobic003G394200 Sobic001G012900 Sobic001G012900 Sobic001G193100--Sobic001G012900 Sobic001G061200 Sobic001G061200 Sobic001G193100--Sobic001G061200 Sobic007G173700 Sobic007G173700 Sobic001G193100--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic001G193100--Sobic004G084500 Sobic004G060300 Sobic004G060300 Sobic001G193100--Sobic004G060300 Sobic004G078700 Sobic004G078700 Sobic001G193100--Sobic004G078700 Sobic001G193100--Sobic010G074900 Sobic003G119700--Sobic008G124900 Sobic003G119700--Sobic001G294300 Sobic006G131000 Sobic006G131000 Sobic003G119700--Sobic006G131000 Sobic007G093800 Sobic007G093800 Sobic003G119700--Sobic007G093800 Sobic003G119700--Sobic001G441400 Sobic001G096000 Sobic001G096000 Sobic003G119700--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic003G119700--Sobic010G278200 Sobic008G046500 Sobic008G046500 Sobic003G119700--Sobic008G046500 Sobic001G451400 Sobic001G451400 Sobic003G119700--Sobic001G451400 Sobic002G063900 Sobic002G063900 Sobic006G281700--Sobic002G063900 Sobic002G260400 Sobic002G260400 Sobic006G281700--Sobic002G260400 Sobic004G246100 Sobic004G246100 Sobic006G281700--Sobic004G246100 Sobic003G160000 Sobic003G160000 Sobic006G281700--Sobic003G160000 Sobic009G260650 Sobic009G260650 Sobic006G281700--Sobic009G260650 Sobic001G042200 Sobic001G042200 Sobic006G281700--Sobic001G042200 Sobic007G218000 Sobic007G218000 Sobic006G281700--Sobic007G218000 Sobic010G204400 Sobic010G204400 Sobic006G281700--Sobic010G204400 Sobic006G281700--Sobic002G056701 Sobic004G345700 Sobic004G345700 Sobic010G074900--Sobic004G345700 Sobic003G205501 Sobic003G205501 Sobic010G074900--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic010G074900--Sobic001G408700 Sobic010G074900--Sobic001G193100 Sobic010G074900--Sobic004G084500 Sobic010G074900--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic010G074900--Sobic005G040900 Sobic004G007300 Sobic004G007300 Sobic010G074900--Sobic004G007300 Sobic003G398400 Sobic003G398400 Sobic010G074900--Sobic003G398400 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 SobicK004100 SobicK004100 Sobic009G226400--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic001G335900 Sobic001G335900 Sobic009G226400--Sobic001G335900 Sobic006G056200 Sobic006G056200 Sobic009G226400--Sobic006G056200 Sobic004G039600 Sobic004G039600 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic001G097500 Sobic001G097500 Sobic003G314300--Sobic001G097500 Sobic005G017200 Sobic005G017200 Sobic003G314300--Sobic005G017200 Sobic003G314300--Sobic010G223400 Sobic003G314300--Sobic001G193100 Sobic005G114500 Sobic005G114500 Sobic003G314300--Sobic005G114500 Sobic009G128500 Sobic009G128500 Sobic003G314300--Sobic009G128500 Sobic004G207900 Sobic004G207900 Sobic003G314300--Sobic004G207900 Sobic001G097900 Sobic001G097900 Sobic003G314300--Sobic001G097900 Sobic002G290100 Sobic002G290100 Sobic003G314300--Sobic002G290100 Sobic009G040800 Sobic009G040800 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic003G214300 Sobic003G214300 Sobic006G142400--Sobic003G214300 Sobic001G099900 Sobic001G099900 Sobic006G142400--Sobic001G099900 Sobic006G142400--Sobic001G042200 Sobic010G264000 Sobic010G264000 Sobic006G142400--Sobic010G264000 Sobic007G042900 Sobic007G042900 Sobic006G142400--Sobic007G042900 Sobic006G142400--Sobic009G040800 Sobic002G150700 Sobic002G150700 Sobic006G142400--Sobic002G150700 Sobic006G142400--Sobic001G012900 Sobic006G142400--Sobic004G084500
Octagon: transcription factors


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