Gene annotation
Transcriptome id Sobic.007G208400.1
Synonym Sb07g027560
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YIP0
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF574
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G03880 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g27790.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a005117
Brachypodium KQJ98945
Barley HORVU7Hr1G051030.11 , HORVU7Hr1G051030.2 , HORVU7Hr1G051030.3 , HORVU7Hr1G051030.1 , HORVU7Hr1G051030.7 , HORVU7Hr1G051030.5 , HORVU7Hr1G051030.8 , HORVU7Hr1G051030.9 , HORVU7Hr1G051030.10 , HORVU7Hr1G051030.13 , HORVU7Hr1G051030.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G119100 tetratricopeptide-like helical, putative, expressed -
2 Sobic.002G057050 - -
3 Sobic.009G063450 - -
4 Sobic.004G174800 expressed protein -
5 Sobic.004G320200 glycosylphosphatidylinositol anchor biosynthesis protein 11, putative, expressed -
6 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.004G176500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.006G209600 cytokinin inducible protein, putative, expressed -
9 Sobic.009G063500 OsWAK75 - OsWAK receptor-like protein kinase, expressed -
10 Sobic.003G212800 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
11 Sobic.009G031450 - -
12 Sobic.002G088800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.001G168700 expressed protein -
14 Sobic.004G173400 expressed protein -
15 Sobic.007G179600 pentatricopeptide, putative, expressed -
16 Sobic.001G327400 - -
17 Sobic.008G009000 pentatricopeptide, putative, expressed -
18 Sobic.001G162900 zinc finger protein-related, putative, expressed K11968: ariadne-1
19 Sobic.010G085000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic007G208400 Sobic007G208400 Sobic003G119100 Sobic003G119100 Sobic007G208400--Sobic003G119100 Sobic002G057050 Sobic002G057050 Sobic007G208400--Sobic002G057050 Sobic009G063450 Sobic009G063450 Sobic007G208400--Sobic009G063450 Sobic004G174800 Sobic004G174800 Sobic007G208400--Sobic004G174800 Sobic004G320200 Sobic004G320200 Sobic007G208400--Sobic004G320200 Sobic008G082800 Sobic008G082800 Sobic007G208400--Sobic008G082800 Sobic004G176500 Sobic004G176500 Sobic007G208400--Sobic004G176500 Sobic006G209600 Sobic006G209600 Sobic007G208400--Sobic006G209600 Sobic009G063500 Sobic009G063500 Sobic007G208400--Sobic009G063500 Sobic003G119100--Sobic004G174800 Sobic003G119100--Sobic008G082800 Sobic003G119100--Sobic007G208400 Sobic009G251600 Sobic009G251600 Sobic003G119100--Sobic009G251600 Sobic009G076900 Sobic009G076900 Sobic003G119100--Sobic009G076900 Sobic004G346200 Sobic004G346200 Sobic003G119100--Sobic004G346200 Sobic001G450300 Sobic001G450300 Sobic003G119100--Sobic001G450300 Sobic003G119100--Sobic002G057050 Sobic003G119100--Sobic009G063450 Sobic001G106300 Sobic001G106300 Sobic002G057050--Sobic001G106300 Sobic002G057050--Sobic009G063450 Sobic001G443300 Sobic001G443300 Sobic002G057050--Sobic001G443300 Sobic004G290400 Sobic004G290400 Sobic002G057050--Sobic004G290400 Sobic008G038700 Sobic008G038700 Sobic002G057050--Sobic008G038700 Sobic002G267300 Sobic002G267300 Sobic002G057050--Sobic002G267300 Sobic009G031450 Sobic009G031450 Sobic002G057050--Sobic009G031450 Sobic010G042700 Sobic010G042700 Sobic002G057050--Sobic010G042700 Sobic001G162900 Sobic001G162900 Sobic002G057050--Sobic001G162900 Sobic001G535300 Sobic001G535300 Sobic009G063450--Sobic001G535300 Sobic002G128750 Sobic002G128750 Sobic009G063450--Sobic002G128750 Sobic009G063450--Sobic002G057050 Sobic009G063450--Sobic009G031450 Sobic009G063450--Sobic004G290400 Sobic002G085700 Sobic002G085700 Sobic009G063450--Sobic002G085700 Sobic001G482500 Sobic001G482500 Sobic009G063450--Sobic001G482500 Sobic001G327400 Sobic001G327400 Sobic009G063450--Sobic001G327400 Sobic009G063450--Sobic002G267300 Sobic004G174800--Sobic003G119100 Sobic004G174800--Sobic001G450300 Sobic008G009000 Sobic008G009000 Sobic004G174800--Sobic008G009000 Sobic004G217900 Sobic004G217900 Sobic004G174800--Sobic004G217900 Sobic008G099900 Sobic008G099900 Sobic004G174800--Sobic008G099900 Sobic005G210700 Sobic005G210700 Sobic004G174800--Sobic005G210700 Sobic004G174800--Sobic004G346200 Sobic004G174800--Sobic008G082800 Sobic008G170600 Sobic008G170600 Sobic004G174800--Sobic008G170600 Sobic004G320200--Sobic009G063450 Sobic004G320200--Sobic009G063500 Sobic004G320200--Sobic009G031450 Sobic006G062200 Sobic006G062200 Sobic004G320200--Sobic006G062200 Sobic004G320200--Sobic002G057050 Sobic003G157100 Sobic003G157100 Sobic004G320200--Sobic003G157100 Sobic004G313700 Sobic004G313700 Sobic004G320200--Sobic004G313700 Sobic004G320200--Sobic007G208400 Sobic004G320200--Sobic001G106300 Sobic002G172500 Sobic002G172500 Sobic008G082800--Sobic002G172500 Sobic004G256900 Sobic004G256900 Sobic008G082800--Sobic004G256900 Sobic001G478900 Sobic001G478900 Sobic008G082800--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic008G082800--Sobic003G184300 Sobic010G068900 Sobic010G068900 Sobic008G082800--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic008G082800--Sobic009G155400 Sobic006G085900 Sobic006G085900 Sobic008G082800--Sobic006G085900 Sobic008G082800--Sobic009G063500 Sobic006G262800 Sobic006G262800 Sobic008G082800--Sobic006G262800 Sobic010G066900 Sobic010G066900 Sobic004G176500--Sobic010G066900 Sobic009G238700 Sobic009G238700 Sobic004G176500--Sobic009G238700 Sobic001G347100 Sobic001G347100 Sobic004G176500--Sobic001G347100 Sobic007G179600 Sobic007G179600 Sobic004G176500--Sobic007G179600 Sobic004G128666 Sobic004G128666 Sobic004G176500--Sobic004G128666 Sobic004G176500--Sobic005G210700 Sobic008G075100 Sobic008G075100 Sobic004G176500--Sobic008G075100 Sobic004G176500--Sobic002G172500 Sobic004G241000 Sobic004G241000 Sobic004G176500--Sobic004G241000 Sobic001G490800 Sobic001G490800 Sobic006G209600--Sobic001G490800 Sobic003G440200 Sobic003G440200 Sobic006G209600--Sobic003G440200 Sobic009G259300 Sobic009G259300 Sobic006G209600--Sobic009G259300 Sobic006G209600--Sobic007G208400 Sobic006G214800 Sobic006G214800 Sobic006G209600--Sobic006G214800 Sobic010G250500 Sobic010G250500 Sobic006G209600--Sobic010G250500 Sobic010G067000 Sobic010G067000 Sobic006G209600--Sobic010G067000 Sobic006G209600--Sobic004G176500 Sobic002G088800 Sobic002G088800 Sobic006G209600--Sobic002G088800 Sobic001G242300 Sobic001G242300 Sobic009G063500--Sobic001G242300 Sobic009G063500--Sobic008G082800 Sobic008G031200 Sobic008G031200 Sobic009G063500--Sobic008G031200 Sobic009G063500--Sobic006G085900 Sobic008G169400 Sobic008G169400 Sobic009G063500--Sobic008G169400 Sobic006G262700 Sobic006G262700 Sobic009G063500--Sobic006G262700 Sobic003G397100 Sobic003G397100 Sobic009G063500--Sobic003G397100 Sobic009G063500--Sobic004G241000 Sobic010G143600 Sobic010G143600 Sobic009G063500--Sobic010G143600
Octagon: transcription factors


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