Gene annotation
Transcriptome id Sobic.007G213600.2,Sobic.007G213600.4,Sobic.007G213600.1,Sobic.007G213600.3
Synonym Sb07g028070
Functional annotation SWIB/MDM2 domain containing protein, expressed
UniProt A0A1B6PJ39 , A0A1B6PJ28 , A0A1B6PIZ5 , A0A1B6PIZ2
Pfam PF02201
Panther DB PTHR13844 PTHR13844:SF10
NCBI CDD -
KEGG Orthology K15223; UAF30, upstream activation factor subunit UAF30
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G22360 : SWIB complex BAF60b domain-containing protein
RAP-DB (Rice) LOC_Os08g39310.1 : SWIB/MDM2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033782
Brachypodium KQJ98889
Barley -
Wheat TraesCS7D02G242300 , TraesCS7A02G243700
Populus -


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cDNA sequences
Sobic.007G213600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G121100 ZOS11-03 - C2H2 zinc finger protein, expressed -
2 Sobic.002G291066 - K11254: histone H4
3 Sobic.002G384200 expressed protein -
4 Sobic.004G128000 expressed protein -
5 Sobic.006G075801 - -
6 Sobic.005G016600 DUF567 domain containing protein, putative, expressed -
7 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
8 Sobic.002G253000 no apical meristem protein, putative, expressed -
9 Sobic.004G342900 RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.001G405900 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
11 Sobic.003G338966 - -
12 Sobic.001G324900 proline-rich family protein, putative, expressed -
13 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
15 Sobic.010G013100 expressed protein -
16 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
17 Sobic.010G088000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
18 Sobic.001G417000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
19 Sobic.010G158200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G221600 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic007G213600 Sobic007G213600 Sobic005G121100 Sobic005G121100 Sobic007G213600--Sobic005G121100 Sobic002G291066 Sobic002G291066 Sobic007G213600--Sobic002G291066 Sobic002G384200 Sobic002G384200 Sobic007G213600--Sobic002G384200 Sobic004G128000 Sobic004G128000 Sobic007G213600--Sobic004G128000 Sobic006G075801 Sobic006G075801 Sobic007G213600--Sobic006G075801 Sobic005G016600 Sobic005G016600 Sobic007G213600--Sobic005G016600 Sobic010G057100 Sobic010G057100 Sobic007G213600--Sobic010G057100 Sobic002G253000 Sobic002G253000 Sobic007G213600--Sobic002G253000 Sobic004G342900 Sobic004G342900 Sobic007G213600--Sobic004G342900 Sobic005G121100--Sobic002G384200 Sobic003G022800 Sobic003G022800 Sobic005G121100--Sobic003G022800 Sobic005G121100--Sobic007G213600 Sobic005G121100--Sobic006G075801 Sobic006G180600 Sobic006G180600 Sobic005G121100--Sobic006G180600 Sobic005G121100--Sobic004G342900 Sobic001G324900 Sobic001G324900 Sobic005G121100--Sobic001G324900 Sobic002G005700 Sobic002G005700 Sobic005G121100--Sobic002G005700 Sobic001G405900 Sobic001G405900 Sobic005G121100--Sobic001G405900 Sobic001G054800 Sobic001G054800 Sobic002G291066--Sobic001G054800 Sobic001G529400 Sobic001G529400 Sobic002G291066--Sobic001G529400 Sobic003G057100 Sobic003G057100 Sobic002G291066--Sobic003G057100 Sobic006G186700 Sobic006G186700 Sobic002G291066--Sobic006G186700 Sobic002G276000 Sobic002G276000 Sobic002G291066--Sobic002G276000 Sobic001G313200 Sobic001G313200 Sobic002G291066--Sobic001G313200 Sobic007G198000 Sobic007G198000 Sobic002G291066--Sobic007G198000 Sobic010G047100 Sobic010G047100 Sobic002G291066--Sobic010G047100 Sobic002G291066--Sobic010G057100 Sobic002G384200--Sobic005G121100 Sobic006G016600 Sobic006G016600 Sobic002G384200--Sobic006G016600 Sobic002G384200--Sobic006G180600 Sobic002G384200--Sobic001G324900 Sobic009G206700 Sobic009G206700 Sobic002G384200--Sobic009G206700 Sobic001G047100 Sobic001G047100 Sobic002G384200--Sobic001G047100 Sobic010G076400 Sobic010G076400 Sobic002G384200--Sobic010G076400 Sobic003G358300 Sobic003G358300 Sobic002G384200--Sobic003G358300 Sobic010G054200 Sobic010G054200 Sobic002G384200--Sobic010G054200 Sobic009G015000 Sobic009G015000 Sobic004G128000--Sobic009G015000 Sobic004G128000--Sobic010G057100 Sobic004G099500 Sobic004G099500 Sobic004G128000--Sobic004G099500 Sobic007G172300 Sobic007G172300 Sobic004G128000--Sobic007G172300 Sobic004G128000--Sobic009G206700 Sobic007G045700 Sobic007G045700 Sobic004G128000--Sobic007G045700 Sobic004G128000--Sobic002G253000 Sobic003G338966 Sobic003G338966 Sobic004G128000--Sobic003G338966 Sobic009G177700 Sobic009G177700 Sobic004G128000--Sobic009G177700 Sobic010G158200 Sobic010G158200 Sobic006G075801--Sobic010G158200 Sobic002G326000 Sobic002G326000 Sobic006G075801--Sobic002G326000 Sobic003G337100 Sobic003G337100 Sobic006G075801--Sobic003G337100 Sobic006G239100 Sobic006G239100 Sobic006G075801--Sobic006G239100 Sobic009G167300 Sobic009G167300 Sobic006G075801--Sobic009G167300 Sobic006G075801--Sobic004G342900 Sobic005G231201 Sobic005G231201 Sobic006G075801--Sobic005G231201 Sobic010G045200 Sobic010G045200 Sobic006G075801--Sobic010G045200 Sobic006G075801--Sobic003G022800 Sobic002G420200 Sobic002G420200 Sobic005G016600--Sobic002G420200 Sobic005G016600--Sobic002G253000 Sobic010G256500 Sobic010G256500 Sobic005G016600--Sobic010G256500 Sobic005G016600--Sobic004G342900 Sobic003G283500 Sobic003G283500 Sobic005G016600--Sobic003G283500 Sobic004G300701 Sobic004G300701 Sobic005G016600--Sobic004G300701 Sobic005G139075 Sobic005G139075 Sobic005G016600--Sobic005G139075 Sobic002G350700 Sobic002G350700 Sobic005G016600--Sobic002G350700 Sobic002G318501 Sobic002G318501 Sobic005G016600--Sobic002G318501 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic004G335600 Sobic004G335600 Sobic010G057100--Sobic004G335600 Sobic003G057366 Sobic003G057366 Sobic010G057100--Sobic003G057366 Sobic003G322532 Sobic003G322532 Sobic010G057100--Sobic003G322532 Sobic010G057100--Sobic004G128000 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic010G057100--Sobic001G313200 Sobic002G253000--Sobic002G318501 Sobic002G253000--Sobic010G057100 Sobic002G253000--Sobic009G015000 Sobic002G253000--Sobic005G016600 Sobic002G314700 Sobic002G314700 Sobic002G253000--Sobic002G314700 Sobic002G253000--Sobic004G342900 Sobic002G253000--Sobic004G099500 Sobic002G253000--Sobic004G128000 Sobic001G062600 Sobic001G062600 Sobic002G253000--Sobic001G062600 Sobic004G342900--Sobic003G337100 Sobic004G342900--Sobic002G326000 Sobic004G342900--Sobic010G158200 Sobic004G342900--Sobic002G253000 Sobic004G342900--Sobic006G075801 Sobic004G342900--Sobic005G016600 Sobic004G342900--Sobic004G300701 Sobic004G342900--Sobic003G283500 Sobic004G342900--Sobic009G167300
Octagon: transcription factors


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