Gene annotation
Transcriptome id Sobic.009G024800.1
Synonym ATRAD51B, Sb09g002090, RAD51B
Functional annotation DNA repair protein Rad51, putative, expressed
UniProt C5YZ24
Pfam PF08423
Panther DB PTHR22942 PTHR22942:SF15
NCBI CDD KOG1434; Meiotic recombination protein Dmc1 KOG1433DNA repair protein RAD51/RHP55
KEGG Orthology K10869; RAD51L1, RAD51-like protein 1
Gene Ontology GO:0006281; DNA repair GO:0003677DNA binding GO:0000724double-strand break repair via homologous recombination


Orthologs (automatic annotation)
TAIR AT2G28560 : DNA repair (Rad51) family protein
RAP-DB (Rice) LOC_Os05g03050.1 : DNA repair protein Rad51, putative, expressed
MaizeGDB (Corn) Zm00025a038202
Brachypodium KQK07825
Barley HORVU1Hr1G011840.24 , HORVU1Hr1G011840.25 , HORVU1Hr1G011840.26 , HORVU1Hr1G011840.27 , HORVU1Hr1G011840.20 , HORVU1Hr1G011840.21 , HORVU1Hr1G011840.22 , HORVU1Hr1G011840.23 , HORVU1Hr1G011840.28 , HORVU1Hr1G011840.19 , HORVU1Hr1G011840.18 , HORVU1Hr1G011840.11 , HORVU1Hr1G011840.10 , HORVU1Hr1G011840.13 , HORVU1Hr1G011840.12 , HORVU1Hr1G011840.15 , HORVU1Hr1G011840.14 , HORVU1Hr1G011840.17 , HORVU1Hr1G011840.16 , HORVU1Hr1G011840.9 , HORVU1Hr1G011840.8 , HORVU1Hr1G011840.5 , HORVU1Hr1G011840.4 , HORVU1Hr1G011840.7 , HORVU1Hr1G011840.6 , HORVU1Hr1G011840.1 , HORVU1Hr1G011840.3 , HORVU1Hr1G011840.2
Wheat TraesCS1D02G059600 , TraesCS1D02G059600 , TraesCS1B02G075900 , TraesCS1A02G058500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
2 Sobic.003G043900 kinesin-4, putative, expressed K10406: kinesin family member C2/C3
3 Sobic.003G381500 OsFBX411 - F-box domain containing protein, expressed -
4 Sobic.009G146250 - -
5 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
6 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
7 Sobic.001G109700 expressed protein K19001: HELLS, ATP-dependent DNA helicase
8 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
9 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
10 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
11 Sobic.003G055600 expressed protein -
12 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
13 Sobic.004G020600 ATXR, putative, expressed -
14 Sobic.004G321400 BRUSHY 1, putative, expressed -
15 Sobic.004G317000 growth regulating factor protein, putative, expressed -
16 Sobic.008G075100 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K03575: A/G-specific adenine glycosylase
17 Sobic.009G192700 ATBARD1/BARD1, putative, expressed K10683: BRCA1-associated RING domain protein 1
18 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
19 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
20 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6


Gene co-expression network
sample Sobic009G024800 Sobic009G024800 Sobic001G377700 Sobic001G377700 Sobic009G024800--Sobic001G377700 Sobic003G043900 Sobic003G043900 Sobic009G024800--Sobic003G043900 Sobic003G381500 Sobic003G381500 Sobic009G024800--Sobic003G381500 Sobic009G146250 Sobic009G146250 Sobic009G024800--Sobic009G146250 Sobic002G290000 Sobic002G290000 Sobic009G024800--Sobic002G290000 Sobic001G083300 Sobic001G083300 Sobic009G024800--Sobic001G083300 Sobic001G109700 Sobic001G109700 Sobic009G024800--Sobic001G109700 Sobic004G331600 Sobic004G331600 Sobic009G024800--Sobic004G331600 Sobic005G110535 Sobic005G110535 Sobic009G024800--Sobic005G110535 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic003G183700 Sobic003G183700 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic003G055600 Sobic003G055600 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic003G043900--Sobic001G109700 Sobic002G296000 Sobic002G296000 Sobic003G043900--Sobic002G296000 Sobic003G043900--Sobic007G125300 Sobic001G304800 Sobic001G304800 Sobic003G043900--Sobic001G304800 Sobic003G043900--Sobic005G110535 Sobic003G043900--Sobic009G146250 Sobic003G008700 Sobic003G008700 Sobic003G043900--Sobic003G008700 Sobic004G156200 Sobic004G156200 Sobic003G043900--Sobic004G156200 Sobic009G101100 Sobic009G101100 Sobic003G043900--Sobic009G101100 Sobic005G143100 Sobic005G143100 Sobic003G381500--Sobic005G143100 Sobic003G013800 Sobic003G013800 Sobic003G381500--Sobic003G013800 Sobic005G104300 Sobic005G104300 Sobic003G381500--Sobic005G104300 Sobic003G381500--Sobic005G157300 Sobic003G292700 Sobic003G292700 Sobic003G381500--Sobic003G292700 Sobic003G381500--Sobic001G377700 Sobic001G155800 Sobic001G155800 Sobic003G381500--Sobic001G155800 Sobic002G317700 Sobic002G317700 Sobic003G381500--Sobic002G317700 Sobic001G025900 Sobic001G025900 Sobic003G381500--Sobic001G025900 Sobic009G146250--Sobic004G156200 Sobic009G146250--Sobic006G195500 Sobic009G146250--Sobic002G021200 Sobic006G275500 Sobic006G275500 Sobic009G146250--Sobic006G275500 Sobic006G120600 Sobic006G120600 Sobic009G146250--Sobic006G120600 Sobic009G146250--Sobic007G187700 Sobic009G146250--Sobic001G304800 Sobic005G068800 Sobic005G068800 Sobic009G146250--Sobic005G068800 Sobic009G146250--Sobic001G377700 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic001G456500 Sobic001G456500 Sobic001G083300--Sobic001G456500 Sobic002G223900 Sobic002G223900 Sobic001G083300--Sobic002G223900 Sobic003G444300 Sobic003G444300 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G105800 Sobic001G105800 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic001G109700--Sobic003G043900 Sobic001G109700--Sobic007G125300 Sobic001G109700--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic001G109700--Sobic008G148000 Sobic001G109700--Sobic002G296000 Sobic005G000500 Sobic005G000500 Sobic001G109700--Sobic005G000500 Sobic001G109700--Sobic001G304800 Sobic001G109700--Sobic004G156200 Sobic001G109700--Sobic002G290000 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic010G054600 Sobic010G054600 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.