Gene annotation
Transcriptome id Sobic.009G050600.2,Sobic.009G050600.1
Synonym GATA23, Sb09g004315
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt A0A1Z5R214 , A0A1B6P6L4
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF203
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G26930 : GATA transcription factor 23
RAP-DB (Rice) LOC_Os01g24070.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK07398
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.009G050600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G041900 phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
2 Sobic.010G162200 serine/threonine-protein kinase 19, putative, expressed K08880: serine/threonine kinase 19
3 Sobic.001G087800 expressed protein -
4 Sobic.006G109200 expressed protein -
5 Sobic.006G095100 ORG4, putative, expressed -
6 Sobic.004G157700 hydroxyproline-rich glycoprotein family protein, putative, expressed -
7 Sobic.003G225300 expressed protein -
8 Sobic.001G291400 methyltransferase, putative, expressed -
9 Sobic.004G128100 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
10 Sobic.007G092000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
11 Sobic.009G027200 tetraspanin family protein, putative, expressed -
12 Sobic.001G212100 GEM, putative, expressed -
13 Sobic.007G130500 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
14 Sobic.009G016666 - -
15 Sobic.003G226600 WRKY12, expressed -
16 Sobic.009G075600 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
17 Sobic.010G019200 - -
18 Sobic.001G102200 expressed protein -
19 Sobic.004G278600 OsFBX59 - F-box domain containing protein, expressed -
20 Sobic.006G049200 violaxanthin de-epoxidase, putative, expressed K09839: VDE, violaxanthin de-epoxidase


Gene co-expression network
sample Sobic009G050600 Sobic009G050600 Sobic001G041900 Sobic001G041900 Sobic009G050600--Sobic001G041900 Sobic010G162200 Sobic010G162200 Sobic009G050600--Sobic010G162200 Sobic001G087800 Sobic001G087800 Sobic009G050600--Sobic001G087800 Sobic006G109200 Sobic006G109200 Sobic009G050600--Sobic006G109200 Sobic006G095100 Sobic006G095100 Sobic009G050600--Sobic006G095100 Sobic004G157700 Sobic004G157700 Sobic009G050600--Sobic004G157700 Sobic003G225300 Sobic003G225300 Sobic009G050600--Sobic003G225300 Sobic001G291400 Sobic001G291400 Sobic009G050600--Sobic001G291400 Sobic004G128100 Sobic004G128100 Sobic009G050600--Sobic004G128100 Sobic001G041900--Sobic009G050600 Sobic001G041900--Sobic006G095100 Sobic004G023600 Sobic004G023600 Sobic001G041900--Sobic004G023600 Sobic004G199500 Sobic004G199500 Sobic001G041900--Sobic004G199500 Sobic001G207301 Sobic001G207301 Sobic001G041900--Sobic001G207301 Sobic001G041900--Sobic004G128100 Sobic001G102200 Sobic001G102200 Sobic001G041900--Sobic001G102200 Sobic007G130500 Sobic007G130500 Sobic001G041900--Sobic007G130500 Sobic009G027200 Sobic009G027200 Sobic001G041900--Sobic009G027200 Sobic001G176700 Sobic001G176700 Sobic010G162200--Sobic001G176700 Sobic003G285600 Sobic003G285600 Sobic010G162200--Sobic003G285600 Sobic003G097701 Sobic003G097701 Sobic010G162200--Sobic003G097701 Sobic007G004750 Sobic007G004750 Sobic010G162200--Sobic007G004750 Sobic007G092000 Sobic007G092000 Sobic010G162200--Sobic007G092000 Sobic003G288500 Sobic003G288500 Sobic010G162200--Sobic003G288500 Sobic010G162500 Sobic010G162500 Sobic010G162200--Sobic010G162500 Sobic008G157700 Sobic008G157700 Sobic010G162200--Sobic008G157700 Sobic004G197700 Sobic004G197700 Sobic010G162200--Sobic004G197700 Sobic004G206050 Sobic004G206050 Sobic001G087800--Sobic004G206050 Sobic004G250000 Sobic004G250000 Sobic001G087800--Sobic004G250000 Sobic007G134300 Sobic007G134300 Sobic001G087800--Sobic007G134300 Sobic004G126050 Sobic004G126050 Sobic001G087800--Sobic004G126050 Sobic005G173100 Sobic005G173100 Sobic001G087800--Sobic005G173100 Sobic003G416200 Sobic003G416200 Sobic001G087800--Sobic003G416200 Sobic009G097400 Sobic009G097400 Sobic001G087800--Sobic009G097400 Sobic002G126700 Sobic002G126700 Sobic001G087800--Sobic002G126700 Sobic009G148400 Sobic009G148400 Sobic001G087800--Sobic009G148400 Sobic006G109200--Sobic001G102200 Sobic006G109200--Sobic006G095100 Sobic007G194200 Sobic007G194200 Sobic006G109200--Sobic007G194200 Sobic006G109200--Sobic007G130500 Sobic003G124000 Sobic003G124000 Sobic006G109200--Sobic003G124000 Sobic001G408500 Sobic001G408500 Sobic006G109200--Sobic001G408500 Sobic006G109200--Sobic001G041900 Sobic006G141100 Sobic006G141100 Sobic006G109200--Sobic006G141100 Sobic009G102200 Sobic009G102200 Sobic006G109200--Sobic009G102200 Sobic009G174150 Sobic009G174150 Sobic006G095100--Sobic009G174150 Sobic004G303433 Sobic004G303433 Sobic006G095100--Sobic004G303433 Sobic003G030500 Sobic003G030500 Sobic006G095100--Sobic003G030500 Sobic009G016666 Sobic009G016666 Sobic006G095100--Sobic009G016666 Sobic001G535850 Sobic001G535850 Sobic006G095100--Sobic001G535850 Sobic010G186900 Sobic010G186900 Sobic006G095100--Sobic010G186900 Sobic005G104900 Sobic005G104900 Sobic006G095100--Sobic005G104900 Sobic009G204501 Sobic009G204501 Sobic006G095100--Sobic009G204501 Sobic001G394532 Sobic001G394532 Sobic006G095100--Sobic001G394532 Sobic006G058400 Sobic006G058400 Sobic004G157700--Sobic006G058400 Sobic004G157700--Sobic009G027200 Sobic003G366700 Sobic003G366700 Sobic004G157700--Sobic003G366700 Sobic004G157700--Sobic001G291400 Sobic004G157700--Sobic001G041900 Sobic001G321700 Sobic001G321700 Sobic004G157700--Sobic001G321700 Sobic004G157700--Sobic004G128100 Sobic003G350200 Sobic003G350200 Sobic004G157700--Sobic003G350200 Sobic004G243000 Sobic004G243000 Sobic004G157700--Sobic004G243000 Sobic003G275100 Sobic003G275100 Sobic003G225300--Sobic003G275100 Sobic009G011700 Sobic009G011700 Sobic003G225300--Sobic009G011700 Sobic009G215400 Sobic009G215400 Sobic003G225300--Sobic009G215400 Sobic004G293700 Sobic004G293700 Sobic003G225300--Sobic004G293700 Sobic009G171700 Sobic009G171700 Sobic003G225300--Sobic009G171700 Sobic006G240500 Sobic006G240500 Sobic003G225300--Sobic006G240500 Sobic004G079100 Sobic004G079100 Sobic003G225300--Sobic004G079100 Sobic003G380000 Sobic003G380000 Sobic003G225300--Sobic003G380000 Sobic004G058500 Sobic004G058500 Sobic003G225300--Sobic004G058500 Sobic001G291400--Sobic006G095100 Sobic004G343400 Sobic004G343400 Sobic001G291400--Sobic004G343400 Sobic001G291400--Sobic003G030500 Sobic001G291400--Sobic004G157700 Sobic006G148400 Sobic006G148400 Sobic001G291400--Sobic006G148400 Sobic005G086250 Sobic005G086250 Sobic001G291400--Sobic005G086250 Sobic005G119001 Sobic005G119001 Sobic001G291400--Sobic005G119001 Sobic001G291400--Sobic001G087800 Sobic002G224800 Sobic002G224800 Sobic001G291400--Sobic002G224800 Sobic010G056100 Sobic010G056100 Sobic004G128100--Sobic010G056100 Sobic004G299300 Sobic004G299300 Sobic004G128100--Sobic004G299300 Sobic009G105500 Sobic009G105500 Sobic004G128100--Sobic009G105500 Sobic003G097000 Sobic003G097000 Sobic004G128100--Sobic003G097000 Sobic004G128100--Sobic004G199500 Sobic004G128100--Sobic009G027200 Sobic004G128100--Sobic001G041900 Sobic003G301400 Sobic003G301400 Sobic004G128100--Sobic003G301400 Sobic003G395600 Sobic003G395600 Sobic004G128100--Sobic003G395600
Octagon: transcription factors


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