Gene annotation
Transcriptome id Sobic.009G228900.1,Sobic.009G228900.2
Synonym RRP41, Sb09g028170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
exosome complex exonuclease, putative, expressed
UniProt C5YVG7
Pfam PF03725 PF01138
Panther DB PTHR11953 PTHR11953:SF0
NCBI CDD KOG1068; Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases
KEGG Orthology K11600; RRP41, EXOSC4, exosome complex component RRP41
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G61620 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os09g07820.1,LOC_Os09g07820.2 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a036573
Brachypodium KQK04939 , KQK04940
Barley HORVU1Hr1G085870.1 , HORVU1Hr1G085870.3 , HORVU1Hr1G085870.2
Wheat TraesCS1D02G397700 , TraesCS1A02G389600 , TraesCS7B02G274700 , TraesCS2B02G120300 , TraesCS3A02G041300 , TraesCS4B02G104800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
2 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
3 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
4 Sobic.003G098200 expressed protein -
5 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
7 Sobic.002G300500 DNA-directed RNA polymerase III subunit RPC8, putative, expressed K03022: RPC8, DNA-directed RNA polymerase III subunit RPC8
8 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
9 Sobic.005G088900 AGAP007117-PA, putative, expressed -
10 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
11 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
12 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
13 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
14 Sobic.002G389500 h/ACA ribonucleoprotein complex subunit 4, putative, expressed K11131: DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
15 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
16 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
17 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
18 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
19 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
20 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein


Gene co-expression network
sample Sobic009G228900 Sobic009G228900 Sobic001G097400 Sobic001G097400 Sobic009G228900--Sobic001G097400 Sobic001G235700 Sobic001G235700 Sobic009G228900--Sobic001G235700 Sobic003G235700 Sobic003G235700 Sobic009G228900--Sobic003G235700 Sobic003G098200 Sobic003G098200 Sobic009G228900--Sobic003G098200 Sobic009G176300 Sobic009G176300 Sobic009G228900--Sobic009G176300 Sobic002G110500 Sobic002G110500 Sobic009G228900--Sobic002G110500 Sobic002G300500 Sobic002G300500 Sobic009G228900--Sobic002G300500 Sobic006G251600 Sobic006G251600 Sobic009G228900--Sobic006G251600 Sobic005G088900 Sobic005G088900 Sobic009G228900--Sobic005G088900 Sobic001G097400--Sobic001G235700 Sobic001G436300 Sobic001G436300 Sobic001G097400--Sobic001G436300 Sobic001G097400--Sobic005G088900 Sobic006G127500 Sobic006G127500 Sobic001G097400--Sobic006G127500 Sobic001G097400--Sobic002G110500 Sobic001G097400--Sobic003G098200 Sobic003G432300 Sobic003G432300 Sobic001G097400--Sobic003G432300 Sobic001G149100 Sobic001G149100 Sobic001G097400--Sobic001G149100 Sobic001G097400--Sobic006G251600 Sobic001G235700--Sobic001G097400 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G440900 Sobic001G440900 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic001G235700--Sobic006G127500 Sobic003G130000 Sobic003G130000 Sobic003G235700--Sobic003G130000 Sobic003G235700--Sobic009G176300 Sobic005G098000 Sobic005G098000 Sobic003G235700--Sobic005G098000 Sobic007G140100 Sobic007G140100 Sobic003G235700--Sobic007G140100 Sobic008G163400 Sobic008G163400 Sobic003G235700--Sobic008G163400 Sobic003G144000 Sobic003G144000 Sobic003G235700--Sobic003G144000 Sobic003G235700--Sobic005G088900 Sobic010G161525 Sobic010G161525 Sobic003G235700--Sobic010G161525 Sobic001G268300 Sobic001G268300 Sobic003G235700--Sobic001G268300 Sobic003G098200--Sobic006G127500 Sobic003G098200--Sobic001G097400 Sobic003G257200 Sobic003G257200 Sobic003G098200--Sobic003G257200 Sobic003G436600 Sobic003G436600 Sobic003G098200--Sobic003G436600 Sobic003G098200--Sobic001G436300 Sobic009G233700 Sobic009G233700 Sobic003G098200--Sobic009G233700 Sobic003G098200--Sobic001G235700 Sobic003G425100 Sobic003G425100 Sobic003G098200--Sobic003G425100 Sobic004G227100 Sobic004G227100 Sobic003G098200--Sobic004G227100 Sobic009G176300--Sobic005G088900 Sobic008G068100 Sobic008G068100 Sobic009G176300--Sobic008G068100 Sobic009G191500 Sobic009G191500 Sobic009G176300--Sobic009G191500 Sobic009G176300--Sobic003G432300 Sobic003G336500 Sobic003G336500 Sobic009G176300--Sobic003G336500 Sobic009G176300--Sobic003G235700 Sobic005G028100 Sobic005G028100 Sobic009G176300--Sobic005G028100 Sobic001G199500 Sobic001G199500 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400 Sobic002G110500--Sobic005G088900 Sobic007G006800 Sobic007G006800 Sobic002G110500--Sobic007G006800 Sobic009G216500 Sobic009G216500 Sobic002G110500--Sobic009G216500 Sobic010G250800 Sobic010G250800 Sobic002G110500--Sobic010G250800 Sobic002G110500--Sobic001G097400 Sobic006G106200 Sobic006G106200 Sobic002G110500--Sobic006G106200 Sobic002G110500--Sobic001G199500 Sobic009G031500 Sobic009G031500 Sobic002G110500--Sobic009G031500 Sobic010G041000 Sobic010G041000 Sobic002G110500--Sobic010G041000 Sobic009G163600 Sobic009G163600 Sobic002G300500--Sobic009G163600 Sobic006G095400 Sobic006G095400 Sobic002G300500--Sobic006G095400 Sobic002G300500--Sobic005G028100 Sobic002G300500--Sobic005G088900 Sobic002G300500--Sobic003G432300 Sobic006G059500 Sobic006G059500 Sobic002G300500--Sobic006G059500 Sobic008G163500 Sobic008G163500 Sobic002G300500--Sobic008G163500 Sobic002G300500--Sobic009G176300 Sobic002G399200 Sobic002G399200 Sobic002G300500--Sobic002G399200 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300
Octagon: transcription factors


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