Gene annotation
Transcriptome id Sobic.002G389500.1
Synonym AtCBF5, Sb02g040540, CBF5, NAP57, AtNAP57
Functional annotation h/ACA ribonucleoprotein complex subunit 4, putative, expressed
UniProt C5X3A6
Pfam PF01472 PF16198 PF01509 PF08068
Panther DB PTHR23127
NCBI CDD -
KEGG Orthology K11131; DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
Gene Ontology GO:0003723; RNA binding GO:0006396RNA processing


Orthologs (automatic annotation)
TAIR AT3G57150 : homologue of NAP57
RAP-DB (Rice) LOC_Os07g44190.1 : h/ACA ribonucleoprotein complex subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a023958 , Zm00025a035323 , Zm00025a048895
Brachypodium KQK03004 , PNT65209 , KQJ91630
Barley HORVU2Hr1G027370.1 , HORVU2Hr1G027370.3 , HORVU2Hr1G027370.2 , HORVU2Hr1G027370.5 , HORVU2Hr1G027370.4 , HORVU2Hr1G027400.2 , HORVU2Hr1G027400.5
Wheat -
Populus -


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cDNA sequences
Sobic.002G389500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G155200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
2 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
3 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
4 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
5 Sobic.007G006800 pentatricopeptide, putative, expressed -
6 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
7 Sobic.003G318900 DNA repair metallo-beta-lactamase, putative, expressed K15341: DCLRE1B, DNA cross-link repair 1B protein
8 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
9 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
10 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
11 Sobic.002G300500 DNA-directed RNA polymerase III subunit RPC8, putative, expressed K03022: RPC8, DNA-directed RNA polymerase III subunit RPC8
12 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
13 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
14 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
15 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
16 Sobic.005G088900 AGAP007117-PA, putative, expressed -
17 Sobic.009G228900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
18 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
19 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
20 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G389500 Sobic002G389500 Sobic002G155200 Sobic002G155200 Sobic002G389500--Sobic002G155200 Sobic001G097400 Sobic001G097400 Sobic002G389500--Sobic001G097400 Sobic002G110500 Sobic002G110500 Sobic002G389500--Sobic002G110500 Sobic010G153300 Sobic010G153300 Sobic002G389500--Sobic010G153300 Sobic007G006800 Sobic007G006800 Sobic002G389500--Sobic007G006800 Sobic010G038800 Sobic010G038800 Sobic002G389500--Sobic010G038800 Sobic003G318900 Sobic003G318900 Sobic002G389500--Sobic003G318900 Sobic001G235700 Sobic001G235700 Sobic002G389500--Sobic001G235700 Sobic007G060600 Sobic007G060600 Sobic002G389500--Sobic007G060600 Sobic002G155200--Sobic002G389500 Sobic010G021900 Sobic010G021900 Sobic002G155200--Sobic010G021900 Sobic001G372800 Sobic001G372800 Sobic002G155200--Sobic001G372800 Sobic002G367200 Sobic002G367200 Sobic002G155200--Sobic002G367200 Sobic007G123100 Sobic007G123100 Sobic002G155200--Sobic007G123100 Sobic001G141700 Sobic001G141700 Sobic002G155200--Sobic001G141700 Sobic001G483800 Sobic001G483800 Sobic002G155200--Sobic001G483800 Sobic002G312800 Sobic002G312800 Sobic002G155200--Sobic002G312800 Sobic007G069700 Sobic007G069700 Sobic002G155200--Sobic007G069700 Sobic001G097400--Sobic001G235700 Sobic001G436300 Sobic001G436300 Sobic001G097400--Sobic001G436300 Sobic005G088900 Sobic005G088900 Sobic001G097400--Sobic005G088900 Sobic006G127500 Sobic006G127500 Sobic001G097400--Sobic006G127500 Sobic001G097400--Sobic002G110500 Sobic003G098200 Sobic003G098200 Sobic001G097400--Sobic003G098200 Sobic003G432300 Sobic003G432300 Sobic001G097400--Sobic003G432300 Sobic001G149100 Sobic001G149100 Sobic001G097400--Sobic001G149100 Sobic006G251600 Sobic006G251600 Sobic001G097400--Sobic006G251600 Sobic002G110500--Sobic005G088900 Sobic002G110500--Sobic007G006800 Sobic009G216500 Sobic009G216500 Sobic002G110500--Sobic009G216500 Sobic010G250800 Sobic010G250800 Sobic002G110500--Sobic010G250800 Sobic002G110500--Sobic001G097400 Sobic006G106200 Sobic006G106200 Sobic002G110500--Sobic006G106200 Sobic001G199500 Sobic001G199500 Sobic002G110500--Sobic001G199500 Sobic009G031500 Sobic009G031500 Sobic002G110500--Sobic009G031500 Sobic010G041000 Sobic010G041000 Sobic002G110500--Sobic010G041000 Sobic009G191500 Sobic009G191500 Sobic010G153300--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic010G153300--Sobic004G215900 Sobic010G097500 Sobic010G097500 Sobic010G153300--Sobic010G097500 Sobic010G153300--Sobic010G038800 Sobic002G043000 Sobic002G043000 Sobic010G153300--Sobic002G043000 Sobic007G059700 Sobic007G059700 Sobic010G153300--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic010G153300--Sobic008G068100 Sobic005G098000 Sobic005G098000 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200 Sobic007G006800--Sobic010G250800 Sobic007G006800--Sobic001G199500 Sobic001G408300 Sobic001G408300 Sobic007G006800--Sobic001G408300 Sobic007G006800--Sobic005G088900 Sobic008G113300 Sobic008G113300 Sobic007G006800--Sobic008G113300 Sobic002G021200 Sobic002G021200 Sobic007G006800--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic007G006800--Sobic006G281900 Sobic003G369200 Sobic003G369200 Sobic007G006800--Sobic003G369200 Sobic002G215200 Sobic002G215200 Sobic007G006800--Sobic002G215200 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G038800--Sobic010G153300 Sobic010G038800--Sobic001G408300 Sobic010G038800--Sobic001G372800 Sobic003G322200 Sobic003G322200 Sobic010G038800--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic009G172950 Sobic009G172950 Sobic003G318900--Sobic009G172950 Sobic003G032200 Sobic003G032200 Sobic003G318900--Sobic003G032200 Sobic003G292700 Sobic003G292700 Sobic003G318900--Sobic003G292700 Sobic003G318900--Sobic002G021200 Sobic003G201000 Sobic003G201000 Sobic003G318900--Sobic003G201000 Sobic001G083300 Sobic001G083300 Sobic003G318900--Sobic001G083300 Sobic003G444300 Sobic003G444300 Sobic003G318900--Sobic003G444300 Sobic001G377700 Sobic001G377700 Sobic003G318900--Sobic001G377700 Sobic003G318900--Sobic002G215200 Sobic001G235700--Sobic001G097400 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G440900 Sobic001G440900 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic002G133000 Sobic002G133000 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic001G235700--Sobic006G127500 Sobic001G049800 Sobic001G049800 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic007G060600--Sobic009G191500
Octagon: transcription factors


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