Gene annotation
Transcriptome id Sobic.002G155200.1
Synonym Sb02g019460
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
UniProt A0A1B6QBM8
Pfam PF00254
Panther DB PTHR10516 PTHR10516:SF292
NCBI CDD KOG0552; FKBP-type peptidyl-prolyl cis-trans isomerase
KEGG Orthology K14826; FK506-binding nuclear protein
Gene Ontology GO:0006457; protein folding


Orthologs (automatic annotation)
TAIR AT3G12340 : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
RAP-DB (Rice) LOC_Os09g12270.1 : peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
MaizeGDB (Corn) Zm00025a056146 , Zm00025a046298
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G155200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G389500 h/ACA ribonucleoprotein complex subunit 4, putative, expressed K11131: DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
2 Sobic.010G021900 rad1, putative, expressed K02830: HRAD1, cell cycle checkpoint protein
3 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
4 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
5 Sobic.007G123100 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G141700 acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed K18647: acidic leucine-rich nuclear phosphoprotein 32 family member B
7 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
8 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
9 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
10 Sobic.010G241600 RNASEH2A - Putative ribonuclease H2 large subunit, expressed K10743: ribonuclease H2 subunit A
11 Sobic.001G466600 expressed protein -
12 Sobic.003G257200 expressed protein -
13 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
14 Sobic.009G228900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
15 Sobic.005G088900 AGAP007117-PA, putative, expressed -
16 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
18 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
19 Sobic.003G318900 DNA repair metallo-beta-lactamase, putative, expressed K15341: DCLRE1B, DNA cross-link repair 1B protein
20 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G155200 Sobic002G155200 Sobic002G389500 Sobic002G389500 Sobic002G155200--Sobic002G389500 Sobic010G021900 Sobic010G021900 Sobic002G155200--Sobic010G021900 Sobic001G372800 Sobic001G372800 Sobic002G155200--Sobic001G372800 Sobic002G367200 Sobic002G367200 Sobic002G155200--Sobic002G367200 Sobic007G123100 Sobic007G123100 Sobic002G155200--Sobic007G123100 Sobic001G141700 Sobic001G141700 Sobic002G155200--Sobic001G141700 Sobic001G483800 Sobic001G483800 Sobic002G155200--Sobic001G483800 Sobic002G312800 Sobic002G312800 Sobic002G155200--Sobic002G312800 Sobic007G069700 Sobic007G069700 Sobic002G155200--Sobic007G069700 Sobic002G389500--Sobic002G155200 Sobic001G097400 Sobic001G097400 Sobic002G389500--Sobic001G097400 Sobic002G110500 Sobic002G110500 Sobic002G389500--Sobic002G110500 Sobic010G153300 Sobic010G153300 Sobic002G389500--Sobic010G153300 Sobic007G006800 Sobic007G006800 Sobic002G389500--Sobic007G006800 Sobic010G038800 Sobic010G038800 Sobic002G389500--Sobic010G038800 Sobic003G318900 Sobic003G318900 Sobic002G389500--Sobic003G318900 Sobic001G235700 Sobic001G235700 Sobic002G389500--Sobic001G235700 Sobic007G060600 Sobic007G060600 Sobic002G389500--Sobic007G060600 Sobic002G303800 Sobic002G303800 Sobic010G021900--Sobic002G303800 Sobic004G208100 Sobic004G208100 Sobic010G021900--Sobic004G208100 Sobic003G183700 Sobic003G183700 Sobic010G021900--Sobic003G183700 Sobic002G021200 Sobic002G021200 Sobic010G021900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic010G021900--Sobic006G281900 Sobic001G122100 Sobic001G122100 Sobic010G021900--Sobic001G122100 Sobic003G444300 Sobic003G444300 Sobic010G021900--Sobic003G444300 Sobic002G133000 Sobic002G133000 Sobic010G021900--Sobic002G133000 Sobic006G051000 Sobic006G051000 Sobic010G021900--Sobic006G051000 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic003G322200 Sobic003G322200 Sobic001G372800--Sobic003G322200 Sobic009G010300 Sobic009G010300 Sobic001G372800--Sobic009G010300 Sobic009G191500 Sobic009G191500 Sobic001G372800--Sobic009G191500 Sobic001G401400 Sobic001G401400 Sobic001G372800--Sobic001G401400 Sobic001G372800--Sobic010G038800 Sobic005G028100 Sobic005G028100 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic009G028100 Sobic009G028100 Sobic002G367200--Sobic009G028100 Sobic003G122800 Sobic003G122800 Sobic002G367200--Sobic003G122800 Sobic003G102700 Sobic003G102700 Sobic002G367200--Sobic003G102700 Sobic002G095300 Sobic002G095300 Sobic002G367200--Sobic002G095300 Sobic007G199800 Sobic007G199800 Sobic002G367200--Sobic007G199800 Sobic007G050800 Sobic007G050800 Sobic002G367200--Sobic007G050800 Sobic005G068800 Sobic005G068800 Sobic002G367200--Sobic005G068800 Sobic009G224300 Sobic009G224300 Sobic002G367200--Sobic009G224300 Sobic007G082000 Sobic007G082000 Sobic002G367200--Sobic007G082000 Sobic010G252700 Sobic010G252700 Sobic007G123100--Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic007G123100--Sobic008G179000 Sobic001G149100 Sobic001G149100 Sobic007G123100--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic007G123100--Sobic008G031200 Sobic006G069100 Sobic006G069100 Sobic007G123100--Sobic006G069100 Sobic002G362200 Sobic002G362200 Sobic007G123100--Sobic002G362200 Sobic005G088900 Sobic005G088900 Sobic007G123100--Sobic005G088900 Sobic006G071628 Sobic006G071628 Sobic007G123100--Sobic006G071628 Sobic001G268300 Sobic001G268300 Sobic007G123100--Sobic001G268300 Sobic002G293400 Sobic002G293400 Sobic001G141700--Sobic002G293400 Sobic003G349000 Sobic003G349000 Sobic001G141700--Sobic003G349000 Sobic010G237800 Sobic010G237800 Sobic001G141700--Sobic010G237800 Sobic010G241600 Sobic010G241600 Sobic001G141700--Sobic010G241600 Sobic002G003000 Sobic002G003000 Sobic001G141700--Sobic002G003000 Sobic001G158300 Sobic001G158300 Sobic001G141700--Sobic001G158300 Sobic008G022200 Sobic008G022200 Sobic001G141700--Sobic008G022200 Sobic003G282700 Sobic003G282700 Sobic001G141700--Sobic003G282700 Sobic001G399600 Sobic001G399600 Sobic001G141700--Sobic001G399600 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic008G068100 Sobic008G068100 Sobic001G483800--Sobic008G068100 Sobic001G483800--Sobic002G268100 Sobic001G483800--Sobic009G010300 Sobic003G336500 Sobic003G336500 Sobic001G483800--Sobic003G336500 Sobic001G483800--Sobic005G028100 Sobic001G483800--Sobic005G088900 Sobic001G483800--Sobic003G322200 Sobic001G466600 Sobic001G466600 Sobic002G312800--Sobic001G466600 Sobic006G095400 Sobic006G095400 Sobic002G312800--Sobic006G095400 Sobic002G312800--Sobic003G349000 Sobic001G299800 Sobic001G299800 Sobic002G312800--Sobic001G299800 Sobic002G154400 Sobic002G154400 Sobic002G312800--Sobic002G154400 Sobic002G312800--Sobic010G241600 Sobic009G042100 Sobic009G042100 Sobic002G312800--Sobic009G042100 Sobic002G312800--Sobic003G282700 Sobic007G053700 Sobic007G053700 Sobic002G312800--Sobic007G053700 Sobic002G126800 Sobic002G126800 Sobic007G069700--Sobic002G126800 Sobic007G069700--Sobic003G432300 Sobic007G069700--Sobic005G028100 Sobic002G132600 Sobic002G132600 Sobic007G069700--Sobic002G132600 Sobic007G069700--Sobic010G038800 Sobic001G373000 Sobic001G373000 Sobic007G069700--Sobic001G373000 Sobic009G253400 Sobic009G253400 Sobic007G069700--Sobic009G253400 Sobic004G038100 Sobic004G038100 Sobic007G069700--Sobic004G038100 Sobic007G069700--Sobic001G097400
Octagon: transcription factors


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