Gene annotation
Transcriptome id Sobic.010G043000.1,Sobic.010G043000.2
Synonym Sb10g003790, ORE9, PPS, MAX2
Functional annotation OsFBL27 - F-box domain and LRR containing protein, expressed
UniProt C5Z4C9 , C5Z4D2
Pfam -
Panther DB PTHR24006 PTHR24006:SF466
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42620 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os06g06050.1 : OsFBL27 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a049994 , Zm00025a041560
Brachypodium KQK19576
Barley -
Wheat TraesCS7D02G106000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G043000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G042900 expressed protein -
2 Sobic.009G183500 expressed protein -
3 Sobic.007G023700 MA3 domain containing protein, expressed -
4 Sobic.002G355500 C2 domain containing protein, putative, expressed -
5 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
6 Sobic.009G022000 white-brown complex homolog protein 16, putative, expressed -
7 Sobic.003G093600 methyltransferase, putative, expressed -
8 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.005G007800 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
10 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
11 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
12 Sobic.007G154701 - -
13 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
14 Sobic.001G225100 expressed protein -
15 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.002G226000 leucine-rich repeat family protein, putative, expressed -
17 Sobic.001G111366 - -
18 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
19 Sobic.010G019100 expressed protein -
20 Sobic.001G111500 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome A, putative, expressed K12120: phytochrome A


Gene co-expression network
sample Sobic010G043000 Sobic010G043000 Sobic010G042900 Sobic010G042900 Sobic010G043000--Sobic010G042900 Sobic009G183500 Sobic009G183500 Sobic010G043000--Sobic009G183500 Sobic007G023700 Sobic007G023700 Sobic010G043000--Sobic007G023700 Sobic002G355500 Sobic002G355500 Sobic010G043000--Sobic002G355500 Sobic003G145900 Sobic003G145900 Sobic010G043000--Sobic003G145900 Sobic009G022000 Sobic009G022000 Sobic010G043000--Sobic009G022000 Sobic003G093600 Sobic003G093600 Sobic010G043000--Sobic003G093600 Sobic001G028700 Sobic001G028700 Sobic010G043000--Sobic001G028700 Sobic005G007800 Sobic005G007800 Sobic010G043000--Sobic005G007800 Sobic010G042900--Sobic003G093600 Sobic010G042900--Sobic007G023700 Sobic001G347600 Sobic001G347600 Sobic010G042900--Sobic001G347600 Sobic010G042900--Sobic005G007800 Sobic004G034400 Sobic004G034400 Sobic010G042900--Sobic004G034400 Sobic010G042900--Sobic001G028700 Sobic009G235900 Sobic009G235900 Sobic010G042900--Sobic009G235900 Sobic009G117400 Sobic009G117400 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic009G183500--Sobic007G023700 Sobic009G183500--Sobic003G093600 Sobic002G221900 Sobic002G221900 Sobic009G183500--Sobic002G221900 Sobic004G188300 Sobic004G188300 Sobic009G183500--Sobic004G188300 Sobic002G039500 Sobic002G039500 Sobic009G183500--Sobic002G039500 Sobic003G034500 Sobic003G034500 Sobic009G183500--Sobic003G034500 Sobic008G126200 Sobic008G126200 Sobic009G183500--Sobic008G126200 Sobic004G143700 Sobic004G143700 Sobic009G183500--Sobic004G143700 Sobic006G257900 Sobic006G257900 Sobic009G183500--Sobic006G257900 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic002G108800 Sobic002G108800 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G156500 Sobic007G156500 Sobic007G023700--Sobic007G156500 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300 Sobic004G119000 Sobic004G119000 Sobic002G355500--Sobic004G119000 Sobic006G109300 Sobic006G109300 Sobic002G355500--Sobic006G109300 Sobic004G150400 Sobic004G150400 Sobic002G355500--Sobic004G150400 Sobic002G355500--Sobic009G183500 Sobic002G355500--Sobic004G188300 Sobic001G216600 Sobic001G216600 Sobic002G355500--Sobic001G216600 Sobic010G000700 Sobic010G000700 Sobic002G355500--Sobic010G000700 Sobic001G076000 Sobic001G076000 Sobic002G355500--Sobic001G076000 Sobic005G046100 Sobic005G046100 Sobic002G355500--Sobic005G046100 Sobic003G145900--Sobic009G235900 Sobic008G160700 Sobic008G160700 Sobic003G145900--Sobic008G160700 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic003G145900--Sobic010G042900 Sobic002G303000 Sobic002G303000 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic007G150200 Sobic007G150200 Sobic009G022000--Sobic007G150200 Sobic009G022000--Sobic007G023700 Sobic009G022000--Sobic003G093600 Sobic001G247400 Sobic001G247400 Sobic009G022000--Sobic001G247400 Sobic009G022000--Sobic009G183500 Sobic007G154701 Sobic007G154701 Sobic009G022000--Sobic007G154701 Sobic009G022000--Sobic004G150400 Sobic001G225100 Sobic001G225100 Sobic009G022000--Sobic001G225100 Sobic004G153600 Sobic004G153600 Sobic009G022000--Sobic004G153600 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic001G111366 Sobic001G111366 Sobic001G028700--Sobic001G111366 Sobic001G111500 Sobic001G111500 Sobic001G028700--Sobic001G111500 Sobic004G297400 Sobic004G297400 Sobic001G028700--Sobic004G297400 Sobic001G028700--Sobic010G042900 Sobic001G028700--Sobic009G235900 Sobic004G006300 Sobic004G006300 Sobic001G028700--Sobic004G006300 Sobic001G028700--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic001G028700--Sobic006G209500 Sobic009G027000 Sobic009G027000 Sobic001G028700--Sobic009G027000 Sobic005G007800--Sobic009G235900 Sobic005G007800--Sobic010G042900 Sobic005G007800--Sobic002G303000 Sobic005G007800--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic005G007800--Sobic001G359400 Sobic009G040700 Sobic009G040700 Sobic005G007800--Sobic009G040700 Sobic005G007800--Sobic004G143700 Sobic010G078100 Sobic010G078100 Sobic005G007800--Sobic010G078100 Sobic005G007800--Sobic001G424700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.