Gene annotation
Transcriptome id Sobic.010G172700.1,Sobic.010G172700.2
Synonym Sb10g022520, CYP701A3, ATKO1,GA biosynthetic enzyme, GA3, SbKO
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
"Homologous to the rice ent-kaurene oxidase (KO), GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants" (PubMedID : 24924234)
cytochrome P450, putative, expressed
UniProt A0A1W0VTJ2 , C5Z521
Pfam PF00067
Panther DB PTHR24279 PTHR24279:SF57
NCBI CDD KOG0156; Cytochrome P450 CYP2 subfamily
KEGG Orthology K04122; GA3, ent-kaurene oxidase
Gene Ontology GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT5G25900 : GA requiring 3
RAP-DB (Rice) LOC_Os06g37364.2 : cytochrome P450, putative, expressed
MaizeGDB (Corn) Zm00025a051117 , Zm00025a051121 , Zm00025a021096
Brachypodium KQK17916
Barley HORVU2Hr1G100300.1 , HORVU2Hr1G100300.2 , HORVU2Hr1G100300.3 , HORVU2Hr1G100300.4 , HORVU2Hr1G100300.5 , HORVU2Hr1G100300.6 , HORVU0Hr1G021760.2 , HORVU0Hr1G021760.3 , HORVU0Hr1G021760.1 , HORVU0Hr1G021760.4
Wheat TraesCS7A02G362200 , TraesCS2B02G450200 , TraesCS2D02G427200 , TraesCS7D02G360700 , TraesCS2A02G429600 , TraesCS2B02G450100 , TraesCS7A02G362300 , TraesCS7A02G362300
Populus -


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cDNA sequences
Sobic.010G172700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G392200 CAS1 domain-containing protein 1 precursor, putative, expressed -
2 Sobic.010G144900 fiber protein Fb34, putative, expressed -
3 Sobic.010G098600 heat shock protein DnaJ, putative, expressed -
4 Sobic.007G099966 - -
5 Sobic.009G103400 - -
6 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
7 Sobic.002G362200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MSH-like DNA mismatch repair protein, putative, expressed K08735: DNA mismatch repair protein MSH2
8 Sobic.003G056000 staphylococcal nuclease homologue, putative, expressed -
9 Sobic.001G108500 SEC14 cytosolic factor family protein, putative, expressed -
10 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
11 Sobic.010G155100 NAC domain containing protein, putative, expressed -
12 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
13 Sobic.004G107300 "GW2(Ortholog in rice:Song et al., 2007(PubMedID : 31659880)@expressed protein -
14 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
15 Sobic.003G306900 deoxycytidylate deaminase, putative, expressed K01493: dCMP deaminase
16 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
17 Sobic.002G238500 AGC_PVPK_like_kin82y.16 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
18 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
19 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
20 Sobic.008G090000 oxysterol-binding protein, putative, expressed -


Gene co-expression network
sample Sobic010G172700 Sobic010G172700 Sobic001G392200 Sobic001G392200 Sobic010G172700--Sobic001G392200 Sobic010G144900 Sobic010G144900 Sobic010G172700--Sobic010G144900 Sobic010G098600 Sobic010G098600 Sobic010G172700--Sobic010G098600 Sobic007G099966 Sobic007G099966 Sobic010G172700--Sobic007G099966 Sobic009G103400 Sobic009G103400 Sobic010G172700--Sobic009G103400 Sobic001G261400 Sobic001G261400 Sobic010G172700--Sobic001G261400 Sobic002G362200 Sobic002G362200 Sobic010G172700--Sobic002G362200 Sobic003G056000 Sobic003G056000 Sobic010G172700--Sobic003G056000 Sobic001G108500 Sobic001G108500 Sobic010G172700--Sobic001G108500 Sobic002G070300 Sobic002G070300 Sobic001G392200--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G392200--Sobic009G041800 Sobic002G232400 Sobic002G232400 Sobic001G392200--Sobic002G232400 Sobic001G011000 Sobic001G011000 Sobic001G392200--Sobic001G011000 Sobic002G153000 Sobic002G153000 Sobic001G392200--Sobic002G153000 Sobic010G101600 Sobic010G101600 Sobic001G392200--Sobic010G101600 Sobic002G101300 Sobic002G101300 Sobic001G392200--Sobic002G101300 Sobic004G218600 Sobic004G218600 Sobic001G392200--Sobic004G218600 Sobic002G186900 Sobic002G186900 Sobic001G392200--Sobic002G186900 Sobic009G189200 Sobic009G189200 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100 Sobic005G078700 Sobic005G078700 Sobic010G098600--Sobic005G078700 Sobic007G053400 Sobic007G053400 Sobic010G098600--Sobic007G053400 Sobic003G173400 Sobic003G173400 Sobic010G098600--Sobic003G173400 Sobic010G098600--Sobic002G362200 Sobic009G212100 Sobic009G212100 Sobic010G098600--Sobic009G212100 Sobic002G293700 Sobic002G293700 Sobic010G098600--Sobic002G293700 Sobic001G494100 Sobic001G494100 Sobic010G098600--Sobic001G494100 Sobic001G140700 Sobic001G140700 Sobic010G098600--Sobic001G140700 Sobic008G086200 Sobic008G086200 Sobic010G098600--Sobic008G086200 Sobic004G185200 Sobic004G185200 Sobic007G099966--Sobic004G185200 Sobic003G286800 Sobic003G286800 Sobic007G099966--Sobic003G286800 Sobic001G297200 Sobic001G297200 Sobic007G099966--Sobic001G297200 Sobic007G099966--Sobic003G056000 Sobic002G423700 Sobic002G423700 Sobic007G099966--Sobic002G423700 Sobic003G194400 Sobic003G194400 Sobic007G099966--Sobic003G194400 Sobic007G099966--Sobic010G172700 Sobic002G385800 Sobic002G385800 Sobic007G099966--Sobic002G385800 Sobic004G116500 Sobic004G116500 Sobic007G099966--Sobic004G116500 Sobic001G239900 Sobic001G239900 Sobic009G103400--Sobic001G239900 Sobic009G244900 Sobic009G244900 Sobic009G103400--Sobic009G244900 Sobic008G017700 Sobic008G017700 Sobic009G103400--Sobic008G017700 Sobic007G192500 Sobic007G192500 Sobic009G103400--Sobic007G192500 Sobic009G103400--Sobic002G186900 Sobic009G103400--Sobic001G392200 Sobic004G032900 Sobic004G032900 Sobic009G103400--Sobic004G032900 Sobic009G219700 Sobic009G219700 Sobic009G103400--Sobic009G219700 Sobic009G103400--Sobic001G261400 Sobic010G134900 Sobic010G134900 Sobic001G261400--Sobic010G134900 Sobic004G214300 Sobic004G214300 Sobic001G261400--Sobic004G214300 Sobic009G102400 Sobic009G102400 Sobic001G261400--Sobic009G102400 Sobic004G263700 Sobic004G263700 Sobic001G261400--Sobic004G263700 Sobic002G230900 Sobic002G230900 Sobic001G261400--Sobic002G230900 Sobic006G124200 Sobic006G124200 Sobic001G261400--Sobic006G124200 Sobic002G218600 Sobic002G218600 Sobic001G261400--Sobic002G218600 Sobic010G177300 Sobic010G177300 Sobic001G261400--Sobic010G177300 Sobic010G155100 Sobic010G155100 Sobic001G261400--Sobic010G155100 Sobic008G111600 Sobic008G111600 Sobic002G362200--Sobic008G111600 Sobic010G252700 Sobic010G252700 Sobic002G362200--Sobic010G252700 Sobic008G090000 Sobic008G090000 Sobic002G362200--Sobic008G090000 Sobic008G179000 Sobic008G179000 Sobic002G362200--Sobic008G179000 Sobic002G426100 Sobic002G426100 Sobic002G362200--Sobic002G426100 Sobic001G537400 Sobic001G537400 Sobic002G362200--Sobic001G537400 Sobic001G268300 Sobic001G268300 Sobic002G362200--Sobic001G268300 Sobic008G031200 Sobic008G031200 Sobic002G362200--Sobic008G031200 Sobic003G147500 Sobic003G147500 Sobic002G362200--Sobic003G147500 Sobic003G055900 Sobic003G055900 Sobic003G056000--Sobic003G055900 Sobic004G034200 Sobic004G034200 Sobic003G056000--Sobic004G034200 Sobic002G107400 Sobic002G107400 Sobic003G056000--Sobic002G107400 Sobic010G170300 Sobic010G170300 Sobic003G056000--Sobic010G170300 Sobic004G038200 Sobic004G038200 Sobic003G056000--Sobic004G038200 Sobic009G006500 Sobic009G006500 Sobic003G056000--Sobic009G006500 Sobic004G126700 Sobic004G126700 Sobic003G056000--Sobic004G126700 Sobic001G026300 Sobic001G026300 Sobic003G056000--Sobic001G026300 Sobic003G444200 Sobic003G444200 Sobic003G056000--Sobic003G444200 Sobic001G108500--Sobic001G392200 Sobic001G108500--Sobic009G244900 Sobic001G108500--Sobic009G103400 Sobic003G166500 Sobic003G166500 Sobic001G108500--Sobic003G166500 Sobic001G493400 Sobic001G493400 Sobic001G108500--Sobic001G493400 Sobic003G388900 Sobic003G388900 Sobic001G108500--Sobic003G388900 Sobic001G108500--Sobic010G101600 Sobic007G159700 Sobic007G159700 Sobic001G108500--Sobic007G159700 Sobic005G112100 Sobic005G112100 Sobic001G108500--Sobic005G112100
Octagon: transcription factors


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