Gene annotation
Transcriptome id Sobic.010G274600.1
Synonym Sb10g030850
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5Z2J7
Pfam PF08149
Panther DB PTHR14085 PTHR14085:SF3
NCBI CDD -
KEGG Orthology K14768; UTP7, U3 small nucleolar RNA-associated protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10530 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g08770.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041694
Brachypodium KQK14115 , KQK12519 , KQK12520
Barley HORVU4Hr1G011790.16 , HORVU4Hr1G011790.15 , HORVU4Hr1G011790.12 , HORVU4Hr1G011790.13 , HORVU4Hr1G011790.19 , HORVU2Hr1G124260.11 , HORVU2Hr1G124260.10 , HORVU2Hr1G124260.13 , HORVU2Hr1G124260.12 , HORVU2Hr1G124260.15 , HORVU2Hr1G124260.14 , HORVU2Hr1G124260.5 , HORVU2Hr1G124260.4 , HORVU2Hr1G124260.7 , HORVU2Hr1G124260.6 , HORVU2Hr1G124260.1 , HORVU2Hr1G124260.3 , HORVU2Hr1G124260.2 , HORVU2Hr1G124260.9 , HORVU2Hr1G124260.8 , HORVU4Hr1G011790.22 , HORVU4Hr1G011790.21 , HORVU4Hr1G011790.6 , HORVU4Hr1G011790.7 , HORVU4Hr1G011790.3 , HORVU2Hr1G046230.3 , HORVU2Hr1G046230.4
Wheat TraesCS4D02G069800 , TraesCS1D02G385600 , TraesCS4B02G070900 , TraesCS4A02G244000 , TraesCS4A02G244000
Populus -


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cDNA sequences
Sobic.010G274600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
3 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
4 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
5 Sobic.001G126600 BRCA1 C Terminus domain containing protein, expressed K14843: PES1, pescadillo
6 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
7 Sobic.002G112100 - K14811: ATP-dependent RNA helicase DBP3
8 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
9 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
10 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
11 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
12 Sobic.005G090900 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
13 Sobic.008G169200 SRP40, C-terminal domain containing protein, expressed -
14 Sobic.006G247900 phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
15 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
16 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
17 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
18 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
19 Sobic.009G016400 RNA recognition motif containing protein, expressed -
20 Sobic.001G007900 BCCIP, putative, expressed K15262: BCP1, protein BCP1


Gene co-expression network
sample Sobic010G274600 Sobic010G274600 Sobic008G160000 Sobic008G160000 Sobic010G274600--Sobic008G160000 Sobic009G246500 Sobic009G246500 Sobic010G274600--Sobic009G246500 Sobic004G252000 Sobic004G252000 Sobic010G274600--Sobic004G252000 Sobic010G205900 Sobic010G205900 Sobic010G274600--Sobic010G205900 Sobic001G126600 Sobic001G126600 Sobic010G274600--Sobic001G126600 Sobic004G256000 Sobic004G256000 Sobic010G274600--Sobic004G256000 Sobic002G112100 Sobic002G112100 Sobic010G274600--Sobic002G112100 Sobic006G135900 Sobic006G135900 Sobic010G274600--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic010G274600--Sobic006G084000 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic008G049100 Sobic008G049100 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic002G071400 Sobic002G071400 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic002G423500 Sobic002G423500 Sobic004G252000--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic009G235000 Sobic009G235000 Sobic004G252000--Sobic009G235000 Sobic009G258500 Sobic009G258500 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G047200 Sobic004G047200 Sobic004G252000--Sobic004G047200 Sobic004G252000--Sobic006G135900 Sobic004G252000--Sobic006G084000 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic005G028100 Sobic005G028100 Sobic010G205900--Sobic005G028100 Sobic010G205900--Sobic002G071400 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic010G073200 Sobic010G073200 Sobic001G126600--Sobic010G073200 Sobic008G009600 Sobic008G009600 Sobic001G126600--Sobic008G009600 Sobic001G126600--Sobic004G326600 Sobic001G401400 Sobic001G401400 Sobic001G126600--Sobic001G401400 Sobic001G126600--Sobic002G014400 Sobic001G091900 Sobic001G091900 Sobic001G126600--Sobic001G091900 Sobic006G198600 Sobic006G198600 Sobic001G126600--Sobic006G198600 Sobic003G407600 Sobic003G407600 Sobic001G126600--Sobic003G407600 Sobic001G126600--Sobic003G123200 Sobic002G234300 Sobic002G234300 Sobic004G256000--Sobic002G234300 Sobic004G256000--Sobic002G112100 Sobic004G256000--Sobic009G246500 Sobic004G256000--Sobic002G071400 Sobic009G249800 Sobic009G249800 Sobic004G256000--Sobic009G249800 Sobic006G269900 Sobic006G269900 Sobic004G256000--Sobic006G269900 Sobic008G169200 Sobic008G169200 Sobic004G256000--Sobic008G169200 Sobic004G256000--Sobic008G049100 Sobic004G256000--Sobic008G160000 Sobic002G112100--Sobic004G256000 Sobic002G112100--Sobic008G160000 Sobic002G112100--Sobic002G234300 Sobic002G112100--Sobic009G246500 Sobic010G003400 Sobic010G003400 Sobic002G112100--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic002G112100--Sobic001G052400 Sobic001G251100 Sobic001G251100 Sobic002G112100--Sobic001G251100 Sobic006G086600 Sobic006G086600 Sobic002G112100--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic002G112100--Sobic001G453400 Sobic006G135900--Sobic008G160000 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic006G084000--Sobic006G269900 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic006G084000--Sobic003G407600 Sobic006G084000--Sobic004G224600 Sobic006G084000--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic006G084000--Sobic003G382500 Sobic010G247400 Sobic010G247400 Sobic006G084000--Sobic010G247400 Sobic006G084000--Sobic009G246500
Octagon: transcription factors


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