Gene annotation
Transcriptome id Sobic.001G417400.1
Synonym Sb01g039290
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WPC9
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G37510 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g17060.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001881
Brachypodium KQK22307
Barley HORVU4Hr1G059000.4 , HORVU4Hr1G059000.2 , HORVU4Hr1G059000.3
Wheat TraesCS4A02G099700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G025000 PCF-like (ClassI) Subclade 8 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
2 Sobic.007G036700 amine oxidase, putative, expressed K11450: KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
3 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
4 Sobic.002G243500 similar to Heat shock protein 81-2(PubMedID : 29862293)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
5 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
6 Sobic.009G052500 RNA polymerase Rpb7, N-terminal domain containing protein, expressed K16253: NRPD7, DNA-directed RNA polymerase IV and V subunit 7
7 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
8 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
9 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
10 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
11 Sobic.001G162000 prefoldin subunit, putative, expressed K09550: prefoldin subunit 4
12 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
13 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
14 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
15 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
16 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
17 Sobic.001G110800 csAtPR5, putative, expressed -
18 Sobic.004G284900 expressed protein K03019: RPC11, DNA-directed RNA polymerase III subunit RPC11
19 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
20 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E


Gene co-expression network
sample Sobic001G417400 Sobic001G417400 Sobic006G025000 Sobic006G025000 Sobic001G417400--Sobic006G025000 Sobic007G036700 Sobic007G036700 Sobic001G417400--Sobic007G036700 Sobic001G107300 Sobic001G107300 Sobic001G417400--Sobic001G107300 Sobic002G243500 Sobic002G243500 Sobic001G417400--Sobic002G243500 Sobic001G505000 Sobic001G505000 Sobic001G417400--Sobic001G505000 Sobic009G052500 Sobic009G052500 Sobic001G417400--Sobic009G052500 Sobic002G353500 Sobic002G353500 Sobic001G417400--Sobic002G353500 Sobic004G047500 Sobic004G047500 Sobic001G417400--Sobic004G047500 Sobic001G517600 Sobic001G517600 Sobic001G417400--Sobic001G517600 Sobic002G380000 Sobic002G380000 Sobic006G025000--Sobic002G380000 Sobic006G025000--Sobic004G047500 Sobic005G178700 Sobic005G178700 Sobic006G025000--Sobic005G178700 Sobic006G025000--Sobic001G417400 Sobic009G133400 Sobic009G133400 Sobic006G025000--Sobic009G133400 Sobic004G011000 Sobic004G011000 Sobic006G025000--Sobic004G011000 Sobic003G138600 Sobic003G138600 Sobic006G025000--Sobic003G138600 Sobic003G330200 Sobic003G330200 Sobic006G025000--Sobic003G330200 Sobic006G025000--Sobic001G107300 Sobic009G246950 Sobic009G246950 Sobic007G036700--Sobic009G246950 Sobic007G186300 Sobic007G186300 Sobic007G036700--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic007G036700--Sobic009G171700 Sobic001G007200 Sobic001G007200 Sobic007G036700--Sobic001G007200 Sobic001G073000 Sobic001G073000 Sobic007G036700--Sobic001G073000 Sobic001G054200 Sobic001G054200 Sobic007G036700--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G036700--Sobic003G115800 Sobic002G256300 Sobic002G256300 Sobic007G036700--Sobic002G256300 Sobic001G216200 Sobic001G216200 Sobic007G036700--Sobic001G216200 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G107300--Sobic001G505000 Sobic001G107300--Sobic004G047500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300 Sobic001G402300 Sobic001G402300 Sobic002G243500--Sobic001G402300 Sobic010G219100 Sobic010G219100 Sobic002G243500--Sobic010G219100 Sobic010G251100 Sobic010G251100 Sobic002G243500--Sobic010G251100 Sobic006G098500 Sobic006G098500 Sobic002G243500--Sobic006G098500 Sobic003G247900 Sobic003G247900 Sobic002G243500--Sobic003G247900 Sobic001G285300 Sobic001G285300 Sobic002G243500--Sobic001G285300 Sobic002G413400 Sobic002G413400 Sobic002G243500--Sobic002G413400 Sobic001G448200 Sobic001G448200 Sobic002G243500--Sobic001G448200 Sobic009G040500 Sobic009G040500 Sobic002G243500--Sobic009G040500 Sobic009G165500 Sobic009G165500 Sobic001G505000--Sobic009G165500 Sobic001G505000--Sobic001G107300 Sobic006G149200 Sobic006G149200 Sobic001G505000--Sobic006G149200 Sobic002G289800 Sobic002G289800 Sobic001G505000--Sobic002G289800 Sobic010G222100 Sobic010G222100 Sobic001G505000--Sobic010G222100 Sobic006G115000 Sobic006G115000 Sobic001G505000--Sobic006G115000 Sobic001G505000--Sobic006G013900 Sobic001G429000 Sobic001G429000 Sobic001G505000--Sobic001G429000 Sobic003G174700 Sobic003G174700 Sobic001G505000--Sobic003G174700 Sobic006G231700 Sobic006G231700 Sobic009G052500--Sobic006G231700 Sobic001G094500 Sobic001G094500 Sobic009G052500--Sobic001G094500 Sobic002G051200 Sobic002G051200 Sobic009G052500--Sobic002G051200 Sobic003G434000 Sobic003G434000 Sobic009G052500--Sobic003G434000 Sobic009G052500--Sobic006G013900 Sobic001G389400 Sobic001G389400 Sobic009G052500--Sobic001G389400 Sobic007G022500 Sobic007G022500 Sobic009G052500--Sobic007G022500 Sobic001G034600 Sobic001G034600 Sobic009G052500--Sobic001G034600 Sobic004G265700 Sobic004G265700 Sobic009G052500--Sobic004G265700 Sobic002G353500--Sobic001G107300 Sobic001G040300 Sobic001G040300 Sobic002G353500--Sobic001G040300 Sobic001G081400 Sobic001G081400 Sobic002G353500--Sobic001G081400 Sobic002G353500--Sobic007G022500 Sobic006G108600 Sobic006G108600 Sobic002G353500--Sobic006G108600 Sobic001G349400 Sobic001G349400 Sobic002G353500--Sobic001G349400 Sobic001G544100 Sobic001G544100 Sobic002G353500--Sobic001G544100 Sobic002G353500--Sobic004G343600 Sobic002G353500--Sobic009G052500 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100
Octagon: transcription factors


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