Gene annotation
Transcriptome id Sobic.006G025000.2,Sobic.006G025000.3
Synonym Sb06g002260, TCP-like gene;SbTCP14;SbTCP14
Functional annotation PCF-like (ClassI) Subclade 8 TCP (PubMedID : 21444336)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
TCP family transcription factor, putative, expressed
UniProt C5YCQ5
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69690 : TCP family transcription factor
RAP-DB (Rice) LOC_Os04g11830.1 : TCP family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a055622
Brachypodium PNT69714
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
2 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
3 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
4 Sobic.001G417400 RNA recognition motif containing protein, putative, expressed -
5 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
7 Sobic.003G138600 expressed protein -
8 Sobic.003G330200 cupin, RmlC-type, putative, expressed -
9 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
10 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
11 Sobic.002G192500 ES43 protein, putative, expressed -
12 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
13 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
15 Sobic.001G311833 - -
16 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
17 Sobic.002G083400 PHD finger protein, putative, expressed -
18 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
19 Sobic.001G294200 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
20 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic006G025000 Sobic006G025000 Sobic002G380000 Sobic002G380000 Sobic006G025000--Sobic002G380000 Sobic004G047500 Sobic004G047500 Sobic006G025000--Sobic004G047500 Sobic005G178700 Sobic005G178700 Sobic006G025000--Sobic005G178700 Sobic001G417400 Sobic001G417400 Sobic006G025000--Sobic001G417400 Sobic009G133400 Sobic009G133400 Sobic006G025000--Sobic009G133400 Sobic004G011000 Sobic004G011000 Sobic006G025000--Sobic004G011000 Sobic003G138600 Sobic003G138600 Sobic006G025000--Sobic003G138600 Sobic003G330200 Sobic003G330200 Sobic006G025000--Sobic003G330200 Sobic001G107300 Sobic001G107300 Sobic006G025000--Sobic001G107300 Sobic005G157200 Sobic005G157200 Sobic002G380000--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic002G380000--Sobic008G058300 Sobic010G029400 Sobic010G029400 Sobic002G380000--Sobic010G029400 Sobic002G022400 Sobic002G022400 Sobic002G380000--Sobic002G022400 Sobic002G007100 Sobic002G007100 Sobic002G380000--Sobic002G007100 Sobic004G152400 Sobic004G152400 Sobic002G380000--Sobic004G152400 Sobic004G002350 Sobic004G002350 Sobic002G380000--Sobic004G002350 Sobic006G052400 Sobic006G052400 Sobic002G380000--Sobic006G052400 Sobic003G025200 Sobic003G025200 Sobic002G380000--Sobic003G025200 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic007G143500 Sobic007G143500 Sobic005G178700--Sobic007G143500 Sobic004G235500 Sobic004G235500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic001G417400--Sobic006G025000 Sobic007G036700 Sobic007G036700 Sobic001G417400--Sobic007G036700 Sobic001G417400--Sobic001G107300 Sobic002G243500 Sobic002G243500 Sobic001G417400--Sobic002G243500 Sobic001G505000 Sobic001G505000 Sobic001G417400--Sobic001G505000 Sobic009G052500 Sobic009G052500 Sobic001G417400--Sobic009G052500 Sobic002G353500 Sobic002G353500 Sobic001G417400--Sobic002G353500 Sobic001G417400--Sobic004G047500 Sobic001G517600 Sobic001G517600 Sobic001G417400--Sobic001G517600 Sobic004G356900 Sobic004G356900 Sobic009G133400--Sobic004G356900 Sobic006G242300 Sobic006G242300 Sobic009G133400--Sobic006G242300 Sobic010G146600 Sobic010G146600 Sobic009G133400--Sobic010G146600 Sobic004G348100 Sobic004G348100 Sobic009G133400--Sobic004G348100 Sobic004G301900 Sobic004G301900 Sobic009G133400--Sobic004G301900 Sobic010G247400 Sobic010G247400 Sobic009G133400--Sobic010G247400 Sobic010G251100 Sobic010G251100 Sobic009G133400--Sobic010G251100 Sobic001G512600 Sobic001G512600 Sobic009G133400--Sobic001G512600 Sobic007G203700 Sobic007G203700 Sobic009G133400--Sobic007G203700 Sobic008G009600 Sobic008G009600 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic004G011000--Sobic001G370300 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic001G039800 Sobic001G039800 Sobic003G138600--Sobic001G039800 Sobic001G485600 Sobic001G485600 Sobic003G138600--Sobic001G485600 Sobic005G100900 Sobic005G100900 Sobic003G138600--Sobic005G100900 Sobic002G146400 Sobic002G146400 Sobic003G138600--Sobic002G146400 Sobic007G168200 Sobic007G168200 Sobic003G138600--Sobic007G168200 Sobic001G294200 Sobic001G294200 Sobic003G138600--Sobic001G294200 Sobic001G069600 Sobic001G069600 Sobic003G138600--Sobic001G069600 Sobic003G138600--Sobic009G133400 Sobic002G238000 Sobic002G238000 Sobic003G138600--Sobic002G238000 Sobic001G311833 Sobic001G311833 Sobic003G330200--Sobic001G311833 Sobic003G330200--Sobic005G178700 Sobic003G330200--Sobic001G370300 Sobic006G126200 Sobic006G126200 Sobic003G330200--Sobic006G126200 Sobic010G048900 Sobic010G048900 Sobic003G330200--Sobic010G048900 Sobic003G330200--Sobic009G193850 Sobic003G283300 Sobic003G283300 Sobic003G330200--Sobic003G283300 Sobic003G330200--Sobic001G107300 Sobic001G106900 Sobic001G106900 Sobic003G330200--Sobic001G106900 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G107300--Sobic001G505000 Sobic001G107300--Sobic004G047500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G162800 Sobic001G162800 Sobic001G107300--Sobic001G162800 Sobic001G436300 Sobic001G436300 Sobic001G107300--Sobic001G436300
Octagon: transcription factors


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