Gene annotation
Transcriptome id Sobic.002G083400.1
Synonym AL2, Sb02g006980
Functional annotation PHD finger protein, putative, expressed
UniProt A0A1W0W2X2
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF46
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G05610 : alfin-like 1
RAP-DB (Rice) LOC_Os07g12910.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a013368 , Zm00025a038035
Brachypodium KQJ91868 , KQK20300
Barley HORVU2Hr1G052960.8 , HORVU2Hr1G052960.9 , HORVU2Hr1G052960.4 , HORVU2Hr1G052960.5 , HORVU2Hr1G052960.6 , HORVU2Hr1G052960.7 , HORVU2Hr1G052960.1 , HORVU2Hr1G052960.2 , HORVU2Hr1G052960.3 , HORVU5Hr1G112420.24 , HORVU5Hr1G112420.20 , HORVU5Hr1G112420.21 , HORVU5Hr1G112420.22 , HORVU5Hr1G112420.23 , HORVU5Hr1G059130.1 , HORVU5Hr1G059130.2 , HORVU5Hr1G112420.4 , HORVU5Hr1G112420.3 , HORVU5Hr1G112420.2 , HORVU5Hr1G112420.9 , HORVU5Hr1G112420.8 , HORVU5Hr1G112420.5 , HORVU5Hr1G112420.11 , HORVU5Hr1G112420.12 , HORVU5Hr1G112420.15 , HORVU5Hr1G112420.14 , HORVU5Hr1G112420.17 , HORVU5Hr1G112420.16 , HORVU5Hr1G112420.19 , HORVU5Hr1G112420.18 , HORVU5Hr1G112420.6
Wheat TraesCS1B02G129400 , TraesCS1D02G111700 , TraesCS5D02G486400 , TraesCS5D02G486400 , TraesCS1A02G110200 , TraesCS5B02G486600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
3 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
4 Sobic.002G192500 ES43 protein, putative, expressed -
5 Sobic.009G056300 PHD finger protein, putative, expressed -
6 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
7 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
8 Sobic.008G051100 RNA polymerase II subunit A C-terminal domain phosphatase ssu72, putative, expressed K15544: RNA polymerase II subunit A C-terminal domain phosphatase SSU72
9 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
10 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
12 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
13 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
14 Sobic.010G202500 C2 domain containing protein, putative, expressed -
15 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
16 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
17 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
19 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
20 Sobic.001G132900 expressed protein -


Gene co-expression network
sample Sobic002G083400 Sobic002G083400 Sobic006G216000 Sobic006G216000 Sobic002G083400--Sobic006G216000 Sobic006G272200 Sobic006G272200 Sobic002G083400--Sobic006G272200 Sobic001G041200 Sobic001G041200 Sobic002G083400--Sobic001G041200 Sobic002G192500 Sobic002G192500 Sobic002G083400--Sobic002G192500 Sobic009G056300 Sobic009G056300 Sobic002G083400--Sobic009G056300 Sobic003G119400 Sobic003G119400 Sobic002G083400--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic002G083400--Sobic006G252100 Sobic008G051100 Sobic008G051100 Sobic002G083400--Sobic008G051100 Sobic006G281500 Sobic006G281500 Sobic002G083400--Sobic006G281500 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic002G253100 Sobic002G253100 Sobic006G216000--Sobic002G253100 Sobic006G216000--Sobic003G119400 Sobic006G216000--Sobic006G252100 Sobic006G216000--Sobic002G083400 Sobic001G152000 Sobic001G152000 Sobic006G216000--Sobic001G152000 Sobic001G296400 Sobic001G296400 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic010G085200 Sobic010G085200 Sobic006G272200--Sobic010G085200 Sobic006G272200--Sobic003G119400 Sobic001G362300 Sobic001G362300 Sobic006G272200--Sobic001G362300 Sobic002G394800 Sobic002G394800 Sobic006G272200--Sobic002G394800 Sobic009G007700 Sobic009G007700 Sobic006G272200--Sobic009G007700 Sobic004G074300 Sobic004G074300 Sobic006G272200--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G272200--Sobic001G370300 Sobic006G233000 Sobic006G233000 Sobic006G272200--Sobic006G233000 Sobic008G009600 Sobic008G009600 Sobic006G272200--Sobic008G009600 Sobic006G242300 Sobic006G242300 Sobic001G041200--Sobic006G242300 Sobic001G041200--Sobic003G119400 Sobic006G257001 Sobic006G257001 Sobic001G041200--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G041200--Sobic006G034800 Sobic001G067900 Sobic001G067900 Sobic001G041200--Sobic001G067900 Sobic002G259400 Sobic002G259400 Sobic001G041200--Sobic002G259400 Sobic001G105100 Sobic001G105100 Sobic001G041200--Sobic001G105100 Sobic006G056600 Sobic006G056600 Sobic001G041200--Sobic006G056600 Sobic009G033900 Sobic009G033900 Sobic001G041200--Sobic009G033900 Sobic009G096100 Sobic009G096100 Sobic002G192500--Sobic009G096100 Sobic006G056000 Sobic006G056000 Sobic002G192500--Sobic006G056000 Sobic006G047100 Sobic006G047100 Sobic002G192500--Sobic006G047100 Sobic006G111200 Sobic006G111200 Sobic002G192500--Sobic006G111200 Sobic010G050700 Sobic010G050700 Sobic002G192500--Sobic010G050700 Sobic007G043900 Sobic007G043900 Sobic002G192500--Sobic007G043900 Sobic008G056900 Sobic008G056900 Sobic002G192500--Sobic008G056900 Sobic001G087100 Sobic001G087100 Sobic002G192500--Sobic001G087100 Sobic001G485600 Sobic001G485600 Sobic002G192500--Sobic001G485600 Sobic008G125000 Sobic008G125000 Sobic009G056300--Sobic008G125000 Sobic004G206300 Sobic004G206300 Sobic009G056300--Sobic004G206300 Sobic002G224700 Sobic002G224700 Sobic009G056300--Sobic002G224700 Sobic009G194300 Sobic009G194300 Sobic009G056300--Sobic009G194300 Sobic009G056300--Sobic001G041200 Sobic001G080000 Sobic001G080000 Sobic009G056300--Sobic001G080000 Sobic004G027000 Sobic004G027000 Sobic009G056300--Sobic004G027000 Sobic009G056300--Sobic002G394800 Sobic009G056300--Sobic001G152000 Sobic003G119400--Sobic004G074300 Sobic003G119400--Sobic001G041200 Sobic003G119400--Sobic002G259400 Sobic010G146600 Sobic010G146600 Sobic003G119400--Sobic010G146600 Sobic003G119400--Sobic006G216000 Sobic003G119400--Sobic006G272200 Sobic003G119400--Sobic006G242300 Sobic002G268400 Sobic002G268400 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic006G252100--Sobic002G268400 Sobic006G252100--Sobic001G152000 Sobic006G252100--Sobic009G033900 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G094600 Sobic006G094600 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic006G252100--Sobic004G074300 Sobic006G252100--Sobic001G370300 Sobic004G117800 Sobic004G117800 Sobic008G051100--Sobic004G117800 Sobic008G103800 Sobic008G103800 Sobic008G051100--Sobic008G103800 Sobic001G280400 Sobic001G280400 Sobic008G051100--Sobic001G280400 Sobic004G184000 Sobic004G184000 Sobic008G051100--Sobic004G184000 Sobic008G051100--Sobic004G206300 Sobic003G167900 Sobic003G167900 Sobic008G051100--Sobic003G167900 Sobic006G020900 Sobic006G020900 Sobic008G051100--Sobic006G020900 Sobic001G099800 Sobic001G099800 Sobic008G051100--Sobic001G099800 Sobic001G408800 Sobic001G408800 Sobic008G051100--Sobic001G408800 Sobic001G263000 Sobic001G263000 Sobic006G281500--Sobic001G263000 Sobic009G227900 Sobic009G227900 Sobic006G281500--Sobic009G227900 Sobic009G081500 Sobic009G081500 Sobic006G281500--Sobic009G081500 Sobic002G317300 Sobic002G317300 Sobic006G281500--Sobic002G317300 Sobic005G105500 Sobic005G105500 Sobic006G281500--Sobic005G105500 Sobic006G281500--Sobic002G259400 Sobic007G188600 Sobic007G188600 Sobic006G281500--Sobic007G188600 Sobic006G281500--Sobic003G119400 Sobic006G281500--Sobic010G085200
Octagon: transcription factors


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