Gene annotation
Transcriptome id Sobic.001G503500.1
Synonym UBC4, ATUBC4, Sb01g047040
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5WXX5
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF141
NCBI CDD KOG0416; Ubiquitin-protein ligase
KEGG Orthology K10576; UBE2H, ubiquitin-conjugating enzyme E2 H
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63800 : ubiquitin-conjugating enzyme 5
RAP-DB (Rice) LOC_Os10g31000.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a006748 , Zm00025a017701 , Zm00025a000657 , Zm00025a053417
Brachypodium KQK11953 , KQK11954 , KQJ96917 , KQJ96916 , KQJ96914 , KQK23650
Barley HORVU1Hr1G037800.3 , HORVU1Hr1G037800.2 , HORVU1Hr1G037800.5 , HORVU1Hr1G037800.4 , HORVU1Hr1G037800.7 , HORVU1Hr1G037800.6 , HORVU1Hr1G037800.9 , HORVU1Hr1G037800.8 , HORVU7Hr1G069940.1 , HORVU7Hr1G069940.3 , HORVU7Hr1G069940.2 , HORVU4Hr1G080050.5 , HORVU4Hr1G080050.4 , HORVU4Hr1G080050.1 , HORVU4Hr1G080050.3 , HORVU4Hr1G080050.2 , HORVU2Hr1G030300.1
Wheat TraesCS1D02G141600 , TraesCS1D02G141600 , TraesCS1D02G141600 , TraesCS1B02G159100 , TraesCS1B02G159100 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS1A02G142600 , TraesCS4B02G314900 , TraesCS4A02G414200 , TraesCS4D02G312000
Populus -


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cDNA sequences
Sobic.001G503500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G336000 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed K15633: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
2 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
3 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
4 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
5 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
6 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
7 Sobic.004G352500 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
8 Sobic.005G033200 expressed protein -
9 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
10 Sobic.008G087900 expressed protein -
11 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
12 Sobic.009G089700 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
13 Sobic.001G148500 expressed protein -
14 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
15 Sobic.001G444300 expressed protein -
16 Sobic.003G386100 selenoprotein precursor, putative, expressed -
17 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
18 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
19 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
20 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1


Gene co-expression network
sample Sobic001G503500 Sobic001G503500 Sobic003G336000 Sobic003G336000 Sobic001G503500--Sobic003G336000 Sobic003G440800 Sobic003G440800 Sobic001G503500--Sobic003G440800 Sobic005G111900 Sobic005G111900 Sobic001G503500--Sobic005G111900 Sobic003G349300 Sobic003G349300 Sobic001G503500--Sobic003G349300 Sobic006G281800 Sobic006G281800 Sobic001G503500--Sobic006G281800 Sobic007G171500 Sobic007G171500 Sobic001G503500--Sobic007G171500 Sobic004G352500 Sobic004G352500 Sobic001G503500--Sobic004G352500 Sobic005G033200 Sobic005G033200 Sobic001G503500--Sobic005G033200 Sobic006G232200 Sobic006G232200 Sobic001G503500--Sobic006G232200 Sobic010G027000 Sobic010G027000 Sobic003G336000--Sobic010G027000 Sobic002G355300 Sobic002G355300 Sobic003G336000--Sobic002G355300 Sobic003G336000--Sobic001G503500 Sobic009G217900 Sobic009G217900 Sobic003G336000--Sobic009G217900 Sobic004G058200 Sobic004G058200 Sobic003G336000--Sobic004G058200 Sobic010G026925 Sobic010G026925 Sobic003G336000--Sobic010G026925 Sobic007G114200 Sobic007G114200 Sobic003G336000--Sobic007G114200 Sobic003G336000--Sobic004G352500 Sobic001G301800 Sobic001G301800 Sobic003G336000--Sobic001G301800 Sobic001G428100 Sobic001G428100 Sobic003G440800--Sobic001G428100 Sobic001G314500 Sobic001G314500 Sobic003G440800--Sobic001G314500 Sobic009G004600 Sobic009G004600 Sobic003G440800--Sobic009G004600 Sobic004G130100 Sobic004G130100 Sobic003G440800--Sobic004G130100 Sobic010G205300 Sobic010G205300 Sobic003G440800--Sobic010G205300 Sobic003G386100 Sobic003G386100 Sobic003G440800--Sobic003G386100 Sobic009G198500 Sobic009G198500 Sobic003G440800--Sobic009G198500 Sobic001G501200 Sobic001G501200 Sobic003G440800--Sobic001G501200 Sobic003G440800--Sobic005G033200 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic006G029000 Sobic006G029000 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic005G111900--Sobic003G349300 Sobic005G111900--Sobic010G205300 Sobic001G473800 Sobic001G473800 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic009G135600 Sobic009G135600 Sobic003G349300--Sobic009G135600 Sobic001G388200 Sobic001G388200 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic007G168600 Sobic007G168600 Sobic003G349300--Sobic007G168600 Sobic009G225000 Sobic009G225000 Sobic006G281800--Sobic009G225000 Sobic006G281800--Sobic003G349300 Sobic006G281800--Sobic001G283200 Sobic006G281800--Sobic004G181900 Sobic001G206900 Sobic001G206900 Sobic006G281800--Sobic001G206900 Sobic002G385900 Sobic002G385900 Sobic006G281800--Sobic002G385900 Sobic004G206700 Sobic004G206700 Sobic006G281800--Sobic004G206700 Sobic010G064600 Sobic010G064600 Sobic006G281800--Sobic010G064600 Sobic003G312200 Sobic003G312200 Sobic006G281800--Sobic003G312200 Sobic004G297700 Sobic004G297700 Sobic007G171500--Sobic004G297700 Sobic003G034900 Sobic003G034900 Sobic007G171500--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic007G171500--Sobic001G458800 Sobic009G224400 Sobic009G224400 Sobic007G171500--Sobic009G224400 Sobic010G032600 Sobic010G032600 Sobic007G171500--Sobic010G032600 Sobic002G395000 Sobic002G395000 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic009G191400 Sobic009G191400 Sobic007G171500--Sobic009G191400 Sobic001G457000 Sobic001G457000 Sobic007G171500--Sobic001G457000 Sobic003G001200 Sobic003G001200 Sobic004G352500--Sobic003G001200 Sobic004G352500--Sobic005G111900 Sobic003G370500 Sobic003G370500 Sobic004G352500--Sobic003G370500 Sobic004G352500--Sobic007G061400 Sobic007G071300 Sobic007G071300 Sobic004G352500--Sobic007G071300 Sobic004G352500--Sobic004G297700 Sobic004G352500--Sobic002G355300 Sobic001G282500 Sobic001G282500 Sobic004G352500--Sobic001G282500 Sobic001G391200 Sobic001G391200 Sobic004G352500--Sobic001G391200 Sobic003G264200 Sobic003G264200 Sobic005G033200--Sobic003G264200 Sobic005G033200--Sobic001G314500 Sobic005G033200--Sobic001G428100 Sobic005G033200--Sobic004G130100 Sobic005G033200--Sobic005G111900 Sobic005G033200--Sobic003G349300 Sobic005G033200--Sobic009G217900 Sobic005G033200--Sobic003G440800 Sobic006G049700 Sobic006G049700 Sobic005G033200--Sobic006G049700 Sobic003G124800 Sobic003G124800 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic006G232200--Sobic001G388200
Octagon: transcription factors


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