Gene annotation
Transcriptome id Sobic.002G006401.1
Synonym -
Functional annotation -
UniProt A0A1W0W1Q9
Pfam PF00400
Panther DB PTHR19845 PTHR19845:SF7
NCBI CDD KOG2695; WD40 repeat protein
KEGG Orthology K11799; DDB1- and CUL4-associated factor 4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G17370 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g01730.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a044868
Brachypodium KQK21182
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
2 Sobic.007G187600 pentatricopeptide, putative, expressed -
3 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
4 Sobic.001G424600 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
5 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
6 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
7 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
8 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
9 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
10 Sobic.003G114500 zinc knuckle family protein, putative, expressed -
11 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
12 Sobic.002G395700 DNA repair protein RAD51 homolog 4, putative, expressed K10871: RAD51L3, RAD51-like protein 3
13 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
14 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
15 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
16 Sobic.002G383300 MYST-like histone acetyltransferase 1, putative, expressed K11308: MYST1, MOF, histone acetyltransferase MYST1
17 Sobic.010G215900 type II intron maturase protein, putative, expressed -
18 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
20 Sobic.006G049100 expressed protein -


Gene co-expression network
sample Sobic002G006401 Sobic002G006401 Sobic006G270600 Sobic006G270600 Sobic002G006401--Sobic006G270600 Sobic007G187600 Sobic007G187600 Sobic002G006401--Sobic007G187600 Sobic009G036200 Sobic009G036200 Sobic002G006401--Sobic009G036200 Sobic001G424600 Sobic001G424600 Sobic002G006401--Sobic001G424600 Sobic001G487100 Sobic001G487100 Sobic002G006401--Sobic001G487100 Sobic007G016900 Sobic007G016900 Sobic002G006401--Sobic007G016900 Sobic010G264000 Sobic010G264000 Sobic002G006401--Sobic010G264000 Sobic006G067600 Sobic006G067600 Sobic002G006401--Sobic006G067600 Sobic004G129300 Sobic004G129300 Sobic002G006401--Sobic004G129300 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic003G132000 Sobic003G132000 Sobic006G270600--Sobic003G132000 Sobic001G259000 Sobic001G259000 Sobic006G270600--Sobic001G259000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic001G114500 Sobic001G114500 Sobic006G270600--Sobic001G114500 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic007G111100 Sobic007G111100 Sobic009G036200--Sobic007G111100 Sobic001G395100 Sobic001G395100 Sobic009G036200--Sobic001G395100 Sobic009G258400 Sobic009G258400 Sobic009G036200--Sobic009G258400 Sobic003G212900 Sobic003G212900 Sobic009G036200--Sobic003G212900 Sobic002G262700 Sobic002G262700 Sobic009G036200--Sobic002G262700 Sobic006G121300 Sobic006G121300 Sobic009G036200--Sobic006G121300 Sobic004G346100 Sobic004G346100 Sobic009G036200--Sobic004G346100 Sobic009G036200--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic009G036200--Sobic004G309900 Sobic004G049700 Sobic004G049700 Sobic001G424600--Sobic004G049700 Sobic009G151200 Sobic009G151200 Sobic001G424600--Sobic009G151200 Sobic002G063900 Sobic002G063900 Sobic001G424600--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic001G424600--Sobic006G116100 Sobic002G423200 Sobic002G423200 Sobic001G424600--Sobic002G423200 Sobic002G278000 Sobic002G278000 Sobic001G424600--Sobic002G278000 Sobic003G160000 Sobic003G160000 Sobic001G424600--Sobic003G160000 Sobic008G058800 Sobic008G058800 Sobic001G424600--Sobic008G058800 Sobic002G357700 Sobic002G357700 Sobic001G424600--Sobic002G357700 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic006G245900 Sobic006G245900 Sobic007G016900--Sobic006G245900 Sobic007G016900--Sobic007G187600 Sobic003G413100 Sobic003G413100 Sobic007G016900--Sobic003G413100 Sobic003G010900 Sobic003G010900 Sobic007G016900--Sobic003G010900 Sobic004G345400 Sobic004G345400 Sobic007G016900--Sobic004G345400 Sobic007G016900--Sobic001G042200 Sobic002G343200 Sobic002G343200 Sobic007G016900--Sobic002G343200 Sobic003G113300 Sobic003G113300 Sobic007G016900--Sobic003G113300 Sobic009G040800 Sobic009G040800 Sobic007G016900--Sobic009G040800 Sobic010G264000--Sobic006G270600 Sobic008G129600 Sobic008G129600 Sobic010G264000--Sobic008G129600 Sobic008G103300 Sobic008G103300 Sobic010G264000--Sobic008G103300 Sobic010G264000--Sobic001G042200 Sobic010G235200 Sobic010G235200 Sobic010G264000--Sobic010G235200 Sobic003G363700 Sobic003G363700 Sobic010G264000--Sobic003G363700 Sobic003G182300 Sobic003G182300 Sobic010G264000--Sobic003G182300 Sobic010G264000--Sobic001G492200 Sobic006G142400 Sobic006G142400 Sobic010G264000--Sobic006G142400 Sobic002G357100 Sobic002G357100 Sobic006G067600--Sobic002G357100 Sobic004G355800 Sobic004G355800 Sobic006G067600--Sobic004G355800 Sobic006G240100 Sobic006G240100 Sobic006G067600--Sobic006G240100 Sobic006G080400 Sobic006G080400 Sobic006G067600--Sobic006G080400 Sobic006G067600--Sobic004G155600 Sobic003G312700 Sobic003G312700 Sobic006G067600--Sobic003G312700 Sobic006G067600--Sobic001G346900 Sobic005G200900 Sobic005G200900 Sobic006G067600--Sobic005G200900 Sobic001G461400 Sobic001G461400 Sobic006G067600--Sobic001G461400 Sobic010G237900 Sobic010G237900 Sobic004G129300--Sobic010G237900 Sobic007G191700 Sobic007G191700 Sobic004G129300--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic004G129300--Sobic001G002600 Sobic007G091600 Sobic007G091600 Sobic004G129300--Sobic007G091600 Sobic007G090430 Sobic007G090430 Sobic004G129300--Sobic007G090430 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic007G183300 Sobic007G183300 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300
Octagon: transcription factors


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