Gene annotation
Transcriptome id Sobic.003G041500.1
Synonym Sb03g003690
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XMN7
Pfam PF00400
Panther DB PTHR18359
NCBI CDD -
KEGG Orthology K14553; U3 small nucleolar RNA-associated protein 18
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14050 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g41190.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018469
Brachypodium KQK05209
Barley HORVU5Hr1G105970.3 , HORVU2Hr1G032720.1 , HORVU2Hr1G032720.2 , HORVU2Hr1G032720.3 , HORVU2Hr1G032720.4 , HORVU2Hr1G032720.5 , HORVU2Hr1G032720.6 , HORVU2Hr1G032720.7 , HORVU2Hr1G032720.8 , HORVU5Hr1G075320.1 , HORVU5Hr1G105970.7 , HORVU5Hr1G105970.6 , HORVU5Hr1G105970.5 , HORVU5Hr1G105970.4 , HORVU5Hr1G105970.2 , HORVU5Hr1G105970.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
2 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
3 Sobic.002G184900 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
4 Sobic.002G091000 - -
5 Sobic.004G085700 expressed protein -
6 Sobic.007G123400 heavy metal-associated domain containing protein, expressed -
7 Sobic.005G080900 expressed protein -
8 Sobic.006G200000 RNA recognition motif, putative, expressed -
9 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
10 Sobic.010G027300 DNA binding protein, putative, expressed -
11 Sobic.004G056201 - -
12 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
13 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
14 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
15 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
16 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
17 Sobic.009G194900 glucan endo-1,3-beta-glucosidase-like protein 3 precursor, putative, expressed -
18 Sobic.007G129000 nucleobase-ascorbate transporter, putative, expressed -
19 Sobic.002G092200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
20 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1


Gene co-expression network
sample Sobic003G041500 Sobic003G041500 Sobic010G265900 Sobic010G265900 Sobic003G041500--Sobic010G265900 Sobic003G396600 Sobic003G396600 Sobic003G041500--Sobic003G396600 Sobic002G184900 Sobic002G184900 Sobic003G041500--Sobic002G184900 Sobic002G091000 Sobic002G091000 Sobic003G041500--Sobic002G091000 Sobic004G085700 Sobic004G085700 Sobic003G041500--Sobic004G085700 Sobic007G123400 Sobic007G123400 Sobic003G041500--Sobic007G123400 Sobic005G080900 Sobic005G080900 Sobic003G041500--Sobic005G080900 Sobic006G200000 Sobic006G200000 Sobic003G041500--Sobic006G200000 Sobic004G343600 Sobic004G343600 Sobic003G041500--Sobic004G343600 Sobic010G265900--Sobic006G200000 Sobic005G120500 Sobic005G120500 Sobic010G265900--Sobic005G120500 Sobic006G102900 Sobic006G102900 Sobic010G265900--Sobic006G102900 Sobic010G265900--Sobic005G080900 Sobic003G084300 Sobic003G084300 Sobic010G265900--Sobic003G084300 Sobic009G189200 Sobic009G189200 Sobic010G265900--Sobic009G189200 Sobic006G120700 Sobic006G120700 Sobic010G265900--Sobic006G120700 Sobic001G157800 Sobic001G157800 Sobic010G265900--Sobic001G157800 Sobic004G344500 Sobic004G344500 Sobic010G265900--Sobic004G344500 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic003G396600--Sobic005G080900 Sobic010G115200 Sobic010G115200 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic002G101000 Sobic002G101000 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic001G397000 Sobic001G397000 Sobic003G396600--Sobic001G397000 Sobic001G402600 Sobic001G402600 Sobic002G184900--Sobic001G402600 Sobic002G386300 Sobic002G386300 Sobic002G184900--Sobic002G386300 Sobic009G201800 Sobic009G201800 Sobic002G184900--Sobic009G201800 Sobic002G184900--Sobic004G343600 Sobic003G358300 Sobic003G358300 Sobic002G184900--Sobic003G358300 Sobic004G010700 Sobic004G010700 Sobic002G184900--Sobic004G010700 Sobic006G143500 Sobic006G143500 Sobic002G184900--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic002G184900--Sobic002G044000 Sobic003G031200 Sobic003G031200 Sobic002G184900--Sobic003G031200 Sobic003G419400 Sobic003G419400 Sobic002G091000--Sobic003G419400 Sobic003G419300 Sobic003G419300 Sobic002G091000--Sobic003G419300 Sobic003G019400 Sobic003G019400 Sobic002G091000--Sobic003G019400 Sobic010G134900 Sobic010G134900 Sobic002G091000--Sobic010G134900 Sobic004G214300 Sobic004G214300 Sobic002G091000--Sobic004G214300 Sobic001G542200 Sobic001G542200 Sobic002G091000--Sobic001G542200 Sobic010G027300 Sobic010G027300 Sobic002G091000--Sobic010G027300 Sobic001G261400 Sobic001G261400 Sobic002G091000--Sobic001G261400 Sobic003G300900 Sobic003G300900 Sobic002G091000--Sobic003G300900 Sobic004G085700--Sobic010G027300 Sobic001G161000 Sobic001G161000 Sobic004G085700--Sobic001G161000 Sobic006G096600 Sobic006G096600 Sobic004G085700--Sobic006G096600 Sobic005G170100 Sobic005G170100 Sobic004G085700--Sobic005G170100 Sobic002G393600 Sobic002G393600 Sobic004G085700--Sobic002G393600 Sobic005G123500 Sobic005G123500 Sobic004G085700--Sobic005G123500 Sobic004G024100 Sobic004G024100 Sobic004G085700--Sobic004G024100 Sobic004G085700--Sobic005G120500 Sobic009G170800 Sobic009G170800 Sobic004G085700--Sobic009G170800 Sobic002G351100 Sobic002G351100 Sobic007G123400--Sobic002G351100 Sobic001G300400 Sobic001G300400 Sobic007G123400--Sobic001G300400 Sobic001G468000 Sobic001G468000 Sobic007G123400--Sobic001G468000 Sobic003G297200 Sobic003G297200 Sobic007G123400--Sobic003G297200 Sobic006G013900 Sobic006G013900 Sobic007G123400--Sobic006G013900 Sobic007G123400--Sobic003G041500 Sobic002G253900 Sobic002G253900 Sobic007G123400--Sobic002G253900 Sobic009G194900 Sobic009G194900 Sobic007G123400--Sobic009G194900 Sobic010G212700 Sobic010G212700 Sobic007G123400--Sobic010G212700 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic006G200000--Sobic006G120700 Sobic006G200000--Sobic005G080900 Sobic006G200000--Sobic003G396600 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic001G107300 Sobic001G107300 Sobic004G343600--Sobic001G107300 Sobic004G343600--Sobic002G386300 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic001G436300 Sobic001G436300 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic004G343600--Sobic002G184900
Octagon: transcription factors


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