Gene annotation
Transcriptome id Sobic.003G061300.1,Sobic.003G061300.3,Sobic.003G061300.2
Synonym Sb03g005240
Functional annotation thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
UniProt A0A1W0VVU9 , A0A1W0VVV3 , C5XP73
Pfam PF02775 PF00205 PF02775 PF00205 PF02776
Panther DB PTHR18968 PTHR18968:SF130
NCBI CDD -
KEGG Orthology K01568; PDC, pyruvate decarboxylase
Gene Ontology GO:0003824; catalytic activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT4G33070 : Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
RAP-DB (Rice) LOC_Os01g06660.1 : thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035667
Brachypodium PNT77590 , KQK02806 , KQK14495
Barley HORVU3Hr1G018650.4 , HORVU3Hr1G018650.1 , HORVU3Hr1G018650.2 , HORVU3Hr1G018550.1
Wheat TraesCS2A02G088600 , TraesCSU02G014800 , TraesCS3A02G102100 , TraesCS3B02G120000 , TraesCS3B02G119800 , TraesCS3D02G104500 , TraesCS2D02G086300 , TraesCS2B02G583600 , TraesCS2B02G583600 , TraesCS3A02G102200 , TraesCS3A02G102200 , TraesCS3A02G102100 , TraesCS2B02G104000 , TraesCS2A02G552200
Populus -


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cDNA sequences
Sobic.003G061300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G372700 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
2 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.005G187200 expressed protein -
4 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
5 Sobic.004G196700 expressed protein -
6 Sobic.004G188400 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1
7 Sobic.003G333600 OsFBX29 - F-box domain containing protein, expressed -
8 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
9 Sobic.001G413500 expressed protein -
10 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
11 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
12 Sobic.008G078100 EDM2, putative, expressed -
13 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
14 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
15 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
16 Sobic.008G041700 TLD family protein, putative, expressed -
17 Sobic.004G205600 bromodomain domain containing protein, expressed -
18 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
19 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
20 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking


Gene co-expression network
sample Sobic003G061300 Sobic003G061300 Sobic001G372700 Sobic001G372700 Sobic003G061300--Sobic001G372700 Sobic007G078000 Sobic007G078000 Sobic003G061300--Sobic007G078000 Sobic005G187200 Sobic005G187200 Sobic003G061300--Sobic005G187200 Sobic003G324000 Sobic003G324000 Sobic003G061300--Sobic003G324000 Sobic004G196700 Sobic004G196700 Sobic003G061300--Sobic004G196700 Sobic004G188400 Sobic004G188400 Sobic003G061300--Sobic004G188400 Sobic003G333600 Sobic003G333600 Sobic003G061300--Sobic003G333600 Sobic001G479500 Sobic001G479500 Sobic003G061300--Sobic001G479500 Sobic001G413500 Sobic001G413500 Sobic003G061300--Sobic001G413500 Sobic001G372700--Sobic007G078000 Sobic001G372700--Sobic003G333600 Sobic001G372700--Sobic004G188400 Sobic001G372700--Sobic004G196700 Sobic006G082600 Sobic006G082600 Sobic001G372700--Sobic006G082600 Sobic002G284200 Sobic002G284200 Sobic001G372700--Sobic002G284200 Sobic010G124001 Sobic010G124001 Sobic001G372700--Sobic010G124001 Sobic007G211000 Sobic007G211000 Sobic001G372700--Sobic007G211000 Sobic002G165300 Sobic002G165300 Sobic001G372700--Sobic002G165300 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G185900 Sobic007G185900 Sobic007G078000--Sobic007G185900 Sobic010G260500 Sobic010G260500 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic005G149500 Sobic005G149500 Sobic007G078000--Sobic005G149500 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600 Sobic010G263800 Sobic010G263800 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic005G187200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic009G198900 Sobic009G198900 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic003G324000--Sobic001G479500 Sobic010G280100 Sobic010G280100 Sobic003G324000--Sobic010G280100 Sobic003G324000--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic003G324000--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G324000--Sobic003G258400 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic001G477800 Sobic001G477800 Sobic004G196700--Sobic001G477800 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic004G188400--Sobic001G372700 Sobic004G065650 Sobic004G065650 Sobic004G188400--Sobic004G065650 Sobic009G127900 Sobic009G127900 Sobic004G188400--Sobic009G127900 Sobic003G268300 Sobic003G268300 Sobic004G188400--Sobic003G268300 Sobic004G188400--Sobic006G082600 Sobic005G110472 Sobic005G110472 Sobic004G188400--Sobic005G110472 Sobic004G188400--Sobic004G196700 Sobic007G037900 Sobic007G037900 Sobic004G188400--Sobic007G037900 Sobic004G188400--Sobic002G165300 Sobic003G333600--Sobic007G078000 Sobic003G333600--Sobic001G424700 Sobic003G333600--Sobic001G451000 Sobic003G333600--Sobic010G260500 Sobic003G333600--Sobic004G196700 Sobic003G333600--Sobic001G372700 Sobic003G333600--Sobic007G185900 Sobic004G153600 Sobic004G153600 Sobic003G333600--Sobic004G153600 Sobic003G333600--Sobic005G149500 Sobic003G057800 Sobic003G057800 Sobic001G479500--Sobic003G057800 Sobic005G130200 Sobic005G130200 Sobic001G479500--Sobic005G130200 Sobic010G248200 Sobic010G248200 Sobic001G479500--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic001G479500--Sobic005G187200 Sobic002G283300 Sobic002G283300 Sobic001G479500--Sobic002G283300 Sobic004G212800 Sobic004G212800 Sobic001G479500--Sobic004G212800 Sobic009G083900 Sobic009G083900 Sobic001G413500--Sobic009G083900 Sobic008G173900 Sobic008G173900 Sobic001G413500--Sobic008G173900 Sobic002G157000 Sobic002G157000 Sobic001G413500--Sobic002G157000 Sobic004G240800 Sobic004G240800 Sobic001G413500--Sobic004G240800 Sobic001G497300 Sobic001G497300 Sobic001G413500--Sobic001G497300 Sobic005G023900 Sobic005G023900 Sobic001G413500--Sobic005G023900 Sobic003G200200 Sobic003G200200 Sobic001G413500--Sobic003G200200 Sobic004G145500 Sobic004G145500 Sobic001G413500--Sobic004G145500 Sobic001G413500--Sobic003G268300
Octagon: transcription factors


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