Gene annotation
Transcriptome id Sobic.003G252000.1
Synonym Sb03g030760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide containing protein, putative, expressed
UniProt A0A1B6Q585
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF383
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46100 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g48140.1 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038774
Brachypodium KQK09133 , PNT72559 , PNT72558
Barley HORVU3Hr1G061620.1 , HORVU3Hr1G061620.2 , HORVU3Hr1G061620.3 , HORVU3Hr1G061620.4 , HORVU3Hr1G061620.5
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G327400 - -
2 Sobic.004G271200 OsWAK17 - OsWAK short gene, expressed K14649: transcription initiation factor TFIID subunit 8
3 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
4 Sobic.004G143100 PPR repeat domain containing protein, putative, expressed -
5 Sobic.002G384150 - -
6 Sobic.006G062200 DNA cross-link repair 1A protein, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
7 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.004G358500 PRLI-interacting factor A, putative, expressed -
10 Sobic.001G443300 tetratricopeptide repeat domain containing protein, expressed K03353: APC6, anaphase-promoting complex subunit 6
11 Sobic.007G145100 SGT1 protein, putative, expressed -
12 Sobic.009G031450 - -
13 Sobic.001G106300 fanconi anemia L, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
14 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
15 Sobic.007G011800 - K13095: splicing factor 1
16 Sobic.008G171700 ORC3 - Putative origin recognition complex subunit 3, expressed K02605: origin recognition complex subunit 3
17 Sobic.007G129900 expressed protein -
18 Sobic.002G057050 - -
19 Sobic.003G298500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@O-methyltransferase, putative, expressed -
20 Sobic.002G286150 - -


Gene co-expression network
sample Sobic003G252000 Sobic003G252000 Sobic001G327400 Sobic001G327400 Sobic003G252000--Sobic001G327400 Sobic004G271200 Sobic004G271200 Sobic003G252000--Sobic004G271200 Sobic008G022701 Sobic008G022701 Sobic003G252000--Sobic008G022701 Sobic004G143100 Sobic004G143100 Sobic003G252000--Sobic004G143100 Sobic002G384150 Sobic002G384150 Sobic003G252000--Sobic002G384150 Sobic006G062200 Sobic006G062200 Sobic003G252000--Sobic006G062200 Sobic004G290400 Sobic004G290400 Sobic003G252000--Sobic004G290400 Sobic008G082800 Sobic008G082800 Sobic003G252000--Sobic008G082800 Sobic004G358500 Sobic004G358500 Sobic003G252000--Sobic004G358500 Sobic001G327400--Sobic004G290400 Sobic002G384800 Sobic002G384800 Sobic001G327400--Sobic002G384800 Sobic001G482500 Sobic001G482500 Sobic001G327400--Sobic001G482500 Sobic002G289701 Sobic002G289701 Sobic001G327400--Sobic002G289701 Sobic002G013500 Sobic002G013500 Sobic001G327400--Sobic002G013500 Sobic008G006900 Sobic008G006900 Sobic001G327400--Sobic008G006900 Sobic001G177500 Sobic001G177500 Sobic001G327400--Sobic001G177500 Sobic001G189800 Sobic001G189800 Sobic001G327400--Sobic001G189800 Sobic001G370100 Sobic001G370100 Sobic001G327400--Sobic001G370100 Sobic003G332900 Sobic003G332900 Sobic004G271200--Sobic003G332900 Sobic004G271200--Sobic006G062200 Sobic004G271200--Sobic003G252000 Sobic002G146400 Sobic002G146400 Sobic004G271200--Sobic002G146400 Sobic008G165900 Sobic008G165900 Sobic004G271200--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic004G271200--Sobic010G211500 Sobic006G045200 Sobic006G045200 Sobic004G271200--Sobic006G045200 Sobic003G324100 Sobic003G324100 Sobic004G271200--Sobic003G324100 Sobic005G012700 Sobic005G012700 Sobic004G271200--Sobic005G012700 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic001G119600 Sobic001G119600 Sobic008G022701--Sobic001G119600 Sobic002G052400 Sobic002G052400 Sobic008G022701--Sobic002G052400 Sobic007G145100 Sobic007G145100 Sobic008G022701--Sobic007G145100 Sobic005G100900 Sobic005G100900 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic004G027300 Sobic004G027300 Sobic008G022701--Sobic004G027300 Sobic010G098866 Sobic010G098866 Sobic004G143100--Sobic010G098866 Sobic006G054233 Sobic006G054233 Sobic004G143100--Sobic006G054233 Sobic001G422600 Sobic001G422600 Sobic004G143100--Sobic001G422600 Sobic002G181700 Sobic002G181700 Sobic004G143100--Sobic002G181700 Sobic002G054200 Sobic002G054200 Sobic004G143100--Sobic002G054200 Sobic010G134600 Sobic010G134600 Sobic004G143100--Sobic010G134600 Sobic004G143100--Sobic006G062200 Sobic004G143100--Sobic006G045200 Sobic005G037400 Sobic005G037400 Sobic004G143100--Sobic005G037400 Sobic002G312100 Sobic002G312100 Sobic002G384150--Sobic002G312100 Sobic003G326100 Sobic003G326100 Sobic002G384150--Sobic003G326100 Sobic002G223100 Sobic002G223100 Sobic002G384150--Sobic002G223100 Sobic002G012350 Sobic002G012350 Sobic002G384150--Sobic002G012350 Sobic002G267300 Sobic002G267300 Sobic002G384150--Sobic002G267300 Sobic007G129900 Sobic007G129900 Sobic002G384150--Sobic007G129900 Sobic002G384150--Sobic004G290400 Sobic007G069450 Sobic007G069450 Sobic002G384150--Sobic007G069450 Sobic002G401301 Sobic002G401301 Sobic002G384150--Sobic002G401301 Sobic001G521900 Sobic001G521900 Sobic006G062200--Sobic001G521900 Sobic002G252600 Sobic002G252600 Sobic006G062200--Sobic002G252600 Sobic004G159600 Sobic004G159600 Sobic006G062200--Sobic004G159600 Sobic002G128750 Sobic002G128750 Sobic006G062200--Sobic002G128750 Sobic009G063450 Sobic009G063450 Sobic006G062200--Sobic009G063450 Sobic001G535300 Sobic001G535300 Sobic006G062200--Sobic001G535300 Sobic006G062200--Sobic006G045200 Sobic004G193200 Sobic004G193200 Sobic006G062200--Sobic004G193200 Sobic001G444100 Sobic001G444100 Sobic006G062200--Sobic001G444100 Sobic002G044900 Sobic002G044900 Sobic004G290400--Sobic002G044900 Sobic009G067200 Sobic009G067200 Sobic004G290400--Sobic009G067200 Sobic006G088500 Sobic006G088500 Sobic004G290400--Sobic006G088500 Sobic004G290400--Sobic002G401301 Sobic004G290400--Sobic002G312100 Sobic004G290400--Sobic003G326100 Sobic008G053000 Sobic008G053000 Sobic004G290400--Sobic008G053000 Sobic007G007650 Sobic007G007650 Sobic004G290400--Sobic007G007650 Sobic004G274000 Sobic004G274000 Sobic004G290400--Sobic004G274000 Sobic002G172500 Sobic002G172500 Sobic008G082800--Sobic002G172500 Sobic004G256900 Sobic004G256900 Sobic008G082800--Sobic004G256900 Sobic001G478900 Sobic001G478900 Sobic008G082800--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic008G082800--Sobic003G184300 Sobic010G068900 Sobic010G068900 Sobic008G082800--Sobic010G068900 Sobic009G155400 Sobic009G155400 Sobic008G082800--Sobic009G155400 Sobic006G085900 Sobic006G085900 Sobic008G082800--Sobic006G085900 Sobic009G063500 Sobic009G063500 Sobic008G082800--Sobic009G063500 Sobic006G262800 Sobic006G262800 Sobic008G082800--Sobic006G262800 Sobic001G116200 Sobic001G116200 Sobic004G358500--Sobic001G116200 Sobic002G290300 Sobic002G290300 Sobic004G358500--Sobic002G290300 Sobic004G358500--Sobic003G252000 Sobic004G358500--Sobic002G384150 Sobic001G453800 Sobic001G453800 Sobic004G358500--Sobic001G453800 Sobic004G358500--Sobic004G271200 Sobic004G146150 Sobic004G146150 Sobic004G358500--Sobic004G146150 Sobic001G362701 Sobic001G362701 Sobic004G358500--Sobic001G362701 Sobic003G102300 Sobic003G102300 Sobic004G358500--Sobic003G102300
Octagon: transcription factors


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