Gene annotation
Transcriptome id Sobic.004G271200.1,Sobic.004G271200.2
Synonym Sb04g030870
Functional annotation OsWAK17 - OsWAK short gene, expressed
UniProt C5Y0E6
Pfam PF07524
Panther DB PTHR12321 PTHR12321:SF51
NCBI CDD -
KEGG Orthology K14649; transcription initiation factor TFIID subunit 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02160 : Bromodomain transcription factor
RAP-DB (Rice) LOC_Os02g47160.1 : OsWAK17 - OsWAK short gene, expressed
MaizeGDB (Corn) Zm00025a032415
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G271200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
2 Sobic.006G062200 DNA cross-link repair 1A protein, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
3 Sobic.003G252000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -
4 Sobic.002G146400 - -
5 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
6 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
7 Sobic.006G045200 - -
8 Sobic.003G324100 haloacid dehalogenase, putative, expressed K01094: phosphatidylglycerophosphatase GEP4
9 Sobic.005G012700 expressed protein -
10 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
11 Sobic.009G132100 OsFBX172 - F-box domain containing protein, expressed -
12 Sobic.003G039300 expressed protein -
13 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
14 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
15 Sobic.002G031700 - -
16 Sobic.001G422600 expressed protein -
17 Sobic.001G207200 MEE12, putative, expressed -
18 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.007G145100 SGT1 protein, putative, expressed -


Gene co-expression network
sample Sobic004G271200 Sobic004G271200 Sobic003G332900 Sobic003G332900 Sobic004G271200--Sobic003G332900 Sobic006G062200 Sobic006G062200 Sobic004G271200--Sobic006G062200 Sobic003G252000 Sobic003G252000 Sobic004G271200--Sobic003G252000 Sobic002G146400 Sobic002G146400 Sobic004G271200--Sobic002G146400 Sobic008G165900 Sobic008G165900 Sobic004G271200--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic004G271200--Sobic010G211500 Sobic006G045200 Sobic006G045200 Sobic004G271200--Sobic006G045200 Sobic003G324100 Sobic003G324100 Sobic004G271200--Sobic003G324100 Sobic005G012700 Sobic005G012700 Sobic004G271200--Sobic005G012700 Sobic003G332900--Sobic008G165900 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic001G521900 Sobic001G521900 Sobic006G062200--Sobic001G521900 Sobic002G252600 Sobic002G252600 Sobic006G062200--Sobic002G252600 Sobic004G159600 Sobic004G159600 Sobic006G062200--Sobic004G159600 Sobic002G128750 Sobic002G128750 Sobic006G062200--Sobic002G128750 Sobic009G063450 Sobic009G063450 Sobic006G062200--Sobic009G063450 Sobic001G535300 Sobic001G535300 Sobic006G062200--Sobic001G535300 Sobic006G062200--Sobic006G045200 Sobic004G193200 Sobic004G193200 Sobic006G062200--Sobic004G193200 Sobic001G444100 Sobic001G444100 Sobic006G062200--Sobic001G444100 Sobic001G327400 Sobic001G327400 Sobic003G252000--Sobic001G327400 Sobic003G252000--Sobic004G271200 Sobic003G252000--Sobic008G022701 Sobic004G143100 Sobic004G143100 Sobic003G252000--Sobic004G143100 Sobic002G384150 Sobic002G384150 Sobic003G252000--Sobic002G384150 Sobic003G252000--Sobic006G062200 Sobic004G290400 Sobic004G290400 Sobic003G252000--Sobic004G290400 Sobic008G082800 Sobic008G082800 Sobic003G252000--Sobic008G082800 Sobic004G358500 Sobic004G358500 Sobic003G252000--Sobic004G358500 Sobic002G146400--Sobic003G324100 Sobic001G422500 Sobic001G422500 Sobic002G146400--Sobic001G422500 Sobic002G146400--Sobic003G332900 Sobic001G362300 Sobic001G362300 Sobic002G146400--Sobic001G362300 Sobic005G100900 Sobic005G100900 Sobic002G146400--Sobic005G100900 Sobic001G485600 Sobic001G485600 Sobic002G146400--Sobic001G485600 Sobic002G262100 Sobic002G262100 Sobic002G146400--Sobic002G262100 Sobic002G146400--Sobic008G165900 Sobic001G322600 Sobic001G322600 Sobic002G146400--Sobic001G322600 Sobic008G165900--Sobic001G224200 Sobic008G165900--Sobic003G332900 Sobic002G238000 Sobic002G238000 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic007G075800 Sobic007G075800 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic007G227600 Sobic007G227600 Sobic010G211500--Sobic007G227600 Sobic009G036300 Sobic009G036300 Sobic010G211500--Sobic009G036300 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G183400 Sobic010G183400 Sobic010G211500--Sobic010G183400 Sobic010G074100 Sobic010G074100 Sobic010G211500--Sobic010G074100 Sobic006G045200--Sobic001G535300 Sobic006G045200--Sobic002G128750 Sobic007G022400 Sobic007G022400 Sobic006G045200--Sobic007G022400 Sobic006G045200--Sobic004G193200 Sobic001G242350 Sobic001G242350 Sobic006G045200--Sobic001G242350 Sobic006G045200--Sobic001G444100 Sobic001G177500 Sobic001G177500 Sobic006G045200--Sobic001G177500 Sobic002G013500 Sobic002G013500 Sobic006G045200--Sobic002G013500 Sobic005G204400 Sobic005G204400 Sobic006G045200--Sobic005G204400 Sobic003G324100--Sobic001G485600 Sobic009G103600 Sobic009G103600 Sobic003G324100--Sobic009G103600 Sobic003G324100--Sobic002G146400 Sobic001G114400 Sobic001G114400 Sobic003G324100--Sobic001G114400 Sobic001G429300 Sobic001G429300 Sobic003G324100--Sobic001G429300 Sobic002G191100 Sobic002G191100 Sobic003G324100--Sobic002G191100 Sobic003G245900 Sobic003G245900 Sobic003G324100--Sobic003G245900 Sobic001G069600 Sobic001G069600 Sobic003G324100--Sobic001G069600 Sobic004G087600 Sobic004G087600 Sobic003G324100--Sobic004G087600 Sobic002G234700 Sobic002G234700 Sobic005G012700--Sobic002G234700 Sobic002G373950 Sobic002G373950 Sobic005G012700--Sobic002G373950 Sobic003G014700 Sobic003G014700 Sobic005G012700--Sobic003G014700 Sobic009G213200 Sobic009G213200 Sobic005G012700--Sobic009G213200 Sobic005G012700--Sobic001G224200 Sobic005G012700--Sobic009G103600 Sobic005G012700--Sobic008G165900 Sobic009G214200 Sobic009G214200 Sobic005G012700--Sobic009G214200 Sobic005G012700--Sobic006G128400
Octagon: transcription factors


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