Gene annotation
Transcriptome id Sobic.003G423000.1
Synonym Sb03g045600
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6Q866
Pfam PF00400
Panther DB PTHR22844 PTHR22844:SF239
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G51930 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g71780.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026042
Brachypodium PNT73591
Barley HORVU3Hr1G106030.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
2 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
3 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
4 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
5 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
6 Sobic.001G258300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
8 Sobic.003G037800 transferase family protein, putative, expressed -
9 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
10 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
11 Sobic.007G195800 uncharacterized protein family UPF0016 domain containing protein, expressed -
12 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
13 Sobic.001G351000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
14 Sobic.001G502900 nicotiana lesion-inducing like, putative, expressed -
15 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
16 Sobic.001G017100 late embryogenesis abundant protein, putative, expressed -
17 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
18 Sobic.001G267600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed -
19 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
20 Sobic.006G137800 expressed protein -


Gene co-expression network
sample Sobic003G423000 Sobic003G423000 Sobic001G322200 Sobic001G322200 Sobic003G423000--Sobic001G322200 Sobic006G183400 Sobic006G183400 Sobic003G423000--Sobic006G183400 Sobic001G173300 Sobic001G173300 Sobic003G423000--Sobic001G173300 Sobic004G341800 Sobic004G341800 Sobic003G423000--Sobic004G341800 Sobic010G065900 Sobic010G065900 Sobic003G423000--Sobic010G065900 Sobic001G258300 Sobic001G258300 Sobic003G423000--Sobic001G258300 Sobic003G300800 Sobic003G300800 Sobic003G423000--Sobic003G300800 Sobic003G037800 Sobic003G037800 Sobic003G423000--Sobic003G037800 Sobic004G065500 Sobic004G065500 Sobic003G423000--Sobic004G065500 Sobic009G248500 Sobic009G248500 Sobic001G322200--Sobic009G248500 Sobic001G322200--Sobic004G341800 Sobic009G027900 Sobic009G027900 Sobic001G322200--Sobic009G027900 Sobic001G267600 Sobic001G267600 Sobic001G322200--Sobic001G267600 Sobic003G228900 Sobic003G228900 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic001G322200--Sobic004G065500 Sobic006G179500 Sobic006G179500 Sobic006G183400--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic006G183400--Sobic002G140300 Sobic005G196800 Sobic005G196800 Sobic006G183400--Sobic005G196800 Sobic001G247300 Sobic001G247300 Sobic006G183400--Sobic001G247300 Sobic004G222500 Sobic004G222500 Sobic006G183400--Sobic004G222500 Sobic006G183400--Sobic003G037800 Sobic009G247900 Sobic009G247900 Sobic006G183400--Sobic009G247900 Sobic002G359300 Sobic002G359300 Sobic006G183400--Sobic002G359300 Sobic003G264500 Sobic003G264500 Sobic006G183400--Sobic003G264500 Sobic001G516600 Sobic001G516600 Sobic001G173300--Sobic001G516600 Sobic004G257300 Sobic004G257300 Sobic001G173300--Sobic004G257300 Sobic004G036600 Sobic004G036600 Sobic001G173300--Sobic004G036600 Sobic009G208800 Sobic009G208800 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic001G173300--Sobic010G065900 Sobic007G151100 Sobic007G151100 Sobic001G173300--Sobic007G151100 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100 Sobic004G341800--Sobic009G247900 Sobic001G471200 Sobic001G471200 Sobic004G341800--Sobic001G471200 Sobic004G341800--Sobic001G322200 Sobic003G428700 Sobic003G428700 Sobic004G341800--Sobic003G428700 Sobic004G341800--Sobic004G222500 Sobic009G122400 Sobic009G122400 Sobic004G341800--Sobic009G122400 Sobic004G341800--Sobic006G183400 Sobic004G341800--Sobic003G228900 Sobic004G341800--Sobic002G189100 Sobic010G028200 Sobic010G028200 Sobic010G065900--Sobic010G028200 Sobic010G065900--Sobic001G173300 Sobic002G393400 Sobic002G393400 Sobic010G065900--Sobic002G393400 Sobic009G141800 Sobic009G141800 Sobic010G065900--Sobic009G141800 Sobic010G065900--Sobic001G516600 Sobic003G209000 Sobic003G209000 Sobic010G065900--Sobic003G209000 Sobic004G318100 Sobic004G318100 Sobic010G065900--Sobic004G318100 Sobic003G160700 Sobic003G160700 Sobic010G065900--Sobic003G160700 Sobic010G065900--Sobic001G322200 Sobic009G036100 Sobic009G036100 Sobic001G258300--Sobic009G036100 Sobic004G237800 Sobic004G237800 Sobic001G258300--Sobic004G237800 Sobic007G074000 Sobic007G074000 Sobic001G258300--Sobic007G074000 Sobic009G200700 Sobic009G200700 Sobic001G258300--Sobic009G200700 Sobic001G258300--Sobic002G189100 Sobic001G258300--Sobic002G140300 Sobic001G407800 Sobic001G407800 Sobic001G258300--Sobic001G407800 Sobic009G151600 Sobic009G151600 Sobic001G258300--Sobic009G151600 Sobic006G231200 Sobic006G231200 Sobic001G258300--Sobic006G231200 Sobic003G300800--Sobic006G179500 Sobic003G300800--Sobic002G140300 Sobic003G300800--Sobic002G359300 Sobic003G300800--Sobic006G183400 Sobic003G300800--Sobic009G036100 Sobic008G177800 Sobic008G177800 Sobic003G300800--Sobic008G177800 Sobic001G040200 Sobic001G040200 Sobic003G300800--Sobic001G040200 Sobic010G178500 Sobic010G178500 Sobic003G300800--Sobic010G178500 Sobic002G294700 Sobic002G294700 Sobic003G300800--Sobic002G294700 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic002G245100 Sobic002G245100 Sobic003G037800--Sobic002G245100 Sobic001G389000 Sobic001G389000 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic003G037800--Sobic006G183400 Sobic004G321300 Sobic004G321300 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic006G267200 Sobic006G267200 Sobic004G065500--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G065500--Sobic001G459800 Sobic003G393900 Sobic003G393900 Sobic004G065500--Sobic003G393900 Sobic004G065500--Sobic007G074000 Sobic010G086200 Sobic010G086200 Sobic004G065500--Sobic010G086200 Sobic004G306300 Sobic004G306300 Sobic004G065500--Sobic004G306300 Sobic004G065500--Sobic003G228900 Sobic004G065500--Sobic004G321300 Sobic004G065500--Sobic009G247900
Octagon: transcription factors


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