Gene annotation
| Transcriptome id | Sobic.004G074000.1,Sobic.004G074000.2 |
|---|---|
| Synonym | Sb04g006120, LYC |
| Functional annotation | lycopene beta cyclase, chloroplast precursor, putative, expressed |
| UniProt | C5XX29 |
| Pfam | PF05834 |
| Panther DB | PTHR13789 PTHR13789:SF249 |
| NCBI CDD | - |
| KEGG Orthology | K06443; lcyB, crtL1, lycopene beta-cyclase |
| Gene Ontology | GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016117carotenoid biosynthetic process |
Orthologs (automatic annotation)
| TAIR | AT3G10230 : lycopene cyclase |
|---|---|
| RAP-DB (Rice) | LOC_Os02g09750.1 : lycopene beta cyclase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a019384 |
| Brachypodium | KQJ93768 |
| Barley | HORVU6Hr1G035000.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G074000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G140600 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 2 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 3 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 4 | Sobic.010G160700 | PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed | K01595: phosphoenolpyruvate carboxylase |
| 5 | Sobic.008G102000 | Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed | - |
| 6 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 7 | Sobic.005G194100 | expressed protein | - |
| 8 | Sobic.007G223500 | expressed protein | - |
| 9 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 10 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 11 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 12 | Sobic.001G489000 | NAD(P)-linked oxidoreductase superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@putativ eribonuclease P, putative, expressed | - |
| 13 | Sobic.003G378600 | "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed | - |
| 14 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 15 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 16 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 17 | Sobic.004G227200 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
| 18 | Sobic.003G371600 | proton-dependent oligopeptide transport, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 19 | Sobic.010G245200 | expressed protein | - |
| 20 | Sobic.003G002300 | Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed | K15283: solute carrier family 35, member E1 |
Gene co-expression network
Octagon: transcription factors
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