Gene annotation
Transcriptome id Sobic.004G094100.1
Synonym Sb04g007750, CK-responsive GATA transcription factor, CGA1, GNC, GATA21
Functional annotation Decreased expression in phyB-1 mutant (PubMedID : 26893475)
GATA zinc finger domain containing protein, expressed
UniProt A0A194YNP7
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF204
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G56860 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os02g12790.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020184
Brachypodium KQJ94055
Barley HORVU7Hr1G086810.1 , HORVU7Hr1G086810.2 , HORVU7Hr1G086810.3 , HORVU6Hr1G039720.5 , HORVU6Hr1G039720.4 , HORVU6Hr1G039720.6 , HORVU6Hr1G039720.1 , HORVU6Hr1G039720.3 , HORVU6Hr1G039720.2
Wheat TraesCS6D02G173000 , TraesCS6B02G214900 , TraesCS7B02G264800 , TraesCS6A02G185900 , TraesCS7D02G359900 , TraesCS7A02G363100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
2 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
3 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
4 Sobic.010G277600 - -
5 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
6 Sobic.007G052400 rubredoxin family protein, putative, expressed -
7 Sobic.001G309300 expressed protein -
8 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
9 Sobic.001G405700 - -
10 Sobic.004G012900 expressed protein -
11 Sobic.009G043000 thioredoxin, putative, expressed -
12 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
13 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
14 Sobic.001G102800 expressed protein -
15 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
16 Sobic.006G067400 Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
18 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
19 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
20 Sobic.004G274100 expressed protein -


Gene co-expression network
sample Sobic004G094100 Sobic004G094100 Sobic009G059300 Sobic009G059300 Sobic004G094100--Sobic009G059300 Sobic009G030900 Sobic009G030900 Sobic004G094100--Sobic009G030900 Sobic010G005500 Sobic010G005500 Sobic004G094100--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic004G094100--Sobic010G277600 Sobic008G073100 Sobic008G073100 Sobic004G094100--Sobic008G073100 Sobic007G052400 Sobic007G052400 Sobic004G094100--Sobic007G052400 Sobic001G309300 Sobic001G309300 Sobic004G094100--Sobic001G309300 Sobic003G387100 Sobic003G387100 Sobic004G094100--Sobic003G387100 Sobic001G405700 Sobic001G405700 Sobic004G094100--Sobic001G405700 Sobic009G059300--Sobic003G387100 Sobic004G012900 Sobic004G012900 Sobic009G059300--Sobic004G012900 Sobic009G059300--Sobic010G005500 Sobic006G207800 Sobic006G207800 Sobic009G059300--Sobic006G207800 Sobic008G171300 Sobic008G171300 Sobic009G059300--Sobic008G171300 Sobic009G059300--Sobic001G309300 Sobic009G059300--Sobic007G052400 Sobic009G059300--Sobic009G030900 Sobic009G059300--Sobic008G073100 Sobic009G030900--Sobic010G005500 Sobic009G030900--Sobic010G277600 Sobic009G030900--Sobic007G052400 Sobic009G183700 Sobic009G183700 Sobic009G030900--Sobic009G183700 Sobic003G387800 Sobic003G387800 Sobic009G030900--Sobic003G387800 Sobic009G030900--Sobic009G059300 Sobic003G002300 Sobic003G002300 Sobic009G030900--Sobic003G002300 Sobic009G030900--Sobic008G171300 Sobic004G175500 Sobic004G175500 Sobic009G030900--Sobic004G175500 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic010G005500--Sobic009G183700 Sobic002G277100 Sobic002G277100 Sobic010G005500--Sobic002G277100 Sobic010G005500--Sobic003G387800 Sobic010G005500--Sobic004G012900 Sobic010G005500--Sobic010G277600 Sobic010G005500--Sobic009G059300 Sobic010G277600--Sobic009G183700 Sobic010G277600--Sobic009G030900 Sobic010G277600--Sobic010G005500 Sobic010G277600--Sobic007G052400 Sobic004G239100 Sobic004G239100 Sobic010G277600--Sobic004G239100 Sobic010G277600--Sobic004G012900 Sobic010G277600--Sobic002G277100 Sobic007G004600 Sobic007G004600 Sobic010G277600--Sobic007G004600 Sobic007G173800 Sobic007G173800 Sobic010G277600--Sobic007G173800 Sobic005G110400 Sobic005G110400 Sobic008G073100--Sobic005G110400 Sobic001G368500 Sobic001G368500 Sobic008G073100--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic004G336200 Sobic004G336200 Sobic008G073100--Sobic004G336200 Sobic008G073100--Sobic001G309300 Sobic003G077400 Sobic003G077400 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G225500 Sobic007G225500 Sobic007G052400--Sobic007G225500 Sobic007G052400--Sobic009G183700 Sobic007G052400--Sobic009G030900 Sobic008G102000 Sobic008G102000 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic001G309300--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic001G309300--Sobic004G336000 Sobic001G309300--Sobic009G059300 Sobic001G309300--Sobic003G387100 Sobic001G309300--Sobic005G110400 Sobic004G331700 Sobic004G331700 Sobic001G309300--Sobic004G331700 Sobic001G291900 Sobic001G291900 Sobic001G309300--Sobic001G291900 Sobic001G309300--Sobic004G012900 Sobic001G308200 Sobic001G308200 Sobic001G309300--Sobic001G308200 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G160800 Sobic003G160800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400 Sobic005G194100 Sobic005G194100 Sobic001G405700--Sobic005G194100 Sobic001G405700--Sobic007G052400 Sobic001G405700--Sobic010G005500 Sobic001G405700--Sobic009G030900 Sobic001G175700 Sobic001G175700 Sobic001G405700--Sobic001G175700 Sobic001G405700--Sobic004G012900 Sobic001G405700--Sobic008G171300 Sobic001G405700--Sobic004G239100 Sobic002G227700 Sobic002G227700 Sobic001G405700--Sobic002G227700
Octagon: transcription factors


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