Gene annotation
Transcriptome id Sobic.004G213600.2,Sobic.004G213600.3,Sobic.004G213600.4
Synonym Sb04g025890
Functional annotation regulatory subunit, putative, expressed
UniProt A0A194YR06
Pfam PF13306 PF13855
Panther DB PTHR24006 PTHR24006:SF451
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G15740 : Leucine-rich repeat family protein
RAP-DB (Rice) LOC_Os02g39970.1 : regulatory subunit, putative, expressed
MaizeGDB (Corn) Zm00025a021180
Brachypodium KQK00315 , KQK00317 , KQK00316 , KQK00318
Barley -
Wheat TraesCS2B02G377000 , TraesCS2B02G377000 , TraesCS2B02G377000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
2 Sobic.006G153900 transporter, major facilitator family, putative, expressed -
3 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
4 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
5 Sobic.004G317100 DENN domain containing protein, expressed -
6 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
7 Sobic.001G146800 expressed protein -
8 Sobic.001G090500 YT521-B-like family domain containing protein, expressed -
9 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
10 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
11 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
12 Sobic.008G016300 expressed protein -
13 Sobic.002G425700 ribonucleases P/MRP protein subunit POP1 containing protein, expressed K01164: ribonuclease P/MRP protein subunit POP1
14 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
15 Sobic.010G000600 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed -
16 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
17 Sobic.002G169633 - -
18 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
19 Sobic.002G181300 expressed protein -
20 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -


Gene co-expression network
sample Sobic004G213600 Sobic004G213600 Sobic001G498600 Sobic001G498600 Sobic004G213600--Sobic001G498600 Sobic006G153900 Sobic006G153900 Sobic004G213600--Sobic006G153900 Sobic007G065100 Sobic007G065100 Sobic004G213600--Sobic007G065100 Sobic010G112000 Sobic010G112000 Sobic004G213600--Sobic010G112000 Sobic004G317100 Sobic004G317100 Sobic004G213600--Sobic004G317100 Sobic001G058700 Sobic001G058700 Sobic004G213600--Sobic001G058700 Sobic001G146800 Sobic001G146800 Sobic004G213600--Sobic001G146800 Sobic001G090500 Sobic001G090500 Sobic004G213600--Sobic001G090500 Sobic001G178700 Sobic001G178700 Sobic004G213600--Sobic001G178700 Sobic001G498600--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic001G498600--Sobic006G131500 Sobic001G498600--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G498600--Sobic001G058700 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic006G153900--Sobic001G498600 Sobic006G153900--Sobic007G065100 Sobic002G425700 Sobic002G425700 Sobic006G153900--Sobic002G425700 Sobic006G153900--Sobic001G178700 Sobic006G153900--Sobic010G112000 Sobic006G153900--Sobic006G131500 Sobic001G291000 Sobic001G291000 Sobic006G153900--Sobic001G291000 Sobic010G000600 Sobic010G000600 Sobic006G153900--Sobic010G000600 Sobic001G384900 Sobic001G384900 Sobic006G153900--Sobic001G384900 Sobic007G065100--Sobic002G425700 Sobic002G181300 Sobic002G181300 Sobic007G065100--Sobic002G181300 Sobic003G381200 Sobic003G381200 Sobic007G065100--Sobic003G381200 Sobic008G172300 Sobic008G172300 Sobic007G065100--Sobic008G172300 Sobic007G065100--Sobic001G090500 Sobic007G065100--Sobic001G498600 Sobic001G072500 Sobic001G072500 Sobic007G065100--Sobic001G072500 Sobic007G065100--Sobic006G153900 Sobic006G119400 Sobic006G119400 Sobic007G065100--Sobic006G119400 Sobic010G112000--Sobic001G498600 Sobic004G034900 Sobic004G034900 Sobic010G112000--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic010G112000--Sobic002G008900 Sobic001G540400 Sobic001G540400 Sobic010G112000--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic010G112000--Sobic001G289600 Sobic010G112000--Sobic001G146800 Sobic010G112000--Sobic005G008800 Sobic001G280900 Sobic001G280900 Sobic010G112000--Sobic001G280900 Sobic010G112000--Sobic001G058700 Sobic004G181700 Sobic004G181700 Sobic004G317100--Sobic004G181700 Sobic004G317100--Sobic001G498600 Sobic003G359600 Sobic003G359600 Sobic004G317100--Sobic003G359600 Sobic004G317100--Sobic007G193700 Sobic001G159400 Sobic001G159400 Sobic004G317100--Sobic001G159400 Sobic010G256700 Sobic010G256700 Sobic004G317100--Sobic010G256700 Sobic001G365900 Sobic001G365900 Sobic004G317100--Sobic001G365900 Sobic004G317100--Sobic010G112000 Sobic002G173000 Sobic002G173000 Sobic004G317100--Sobic002G173000 Sobic003G408600 Sobic003G408600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic001G146800--Sobic001G058700 Sobic004G200200 Sobic004G200200 Sobic001G146800--Sobic004G200200 Sobic001G146800--Sobic001G498600 Sobic001G146800--Sobic004G347400 Sobic001G146800--Sobic010G112000 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic001G146800--Sobic006G131500 Sobic001G146800--Sobic007G172400 Sobic001G090500--Sobic003G381200 Sobic001G090500--Sobic001G159400 Sobic003G106200 Sobic003G106200 Sobic001G090500--Sobic003G106200 Sobic001G090500--Sobic007G193700 Sobic001G090500--Sobic007G065100 Sobic004G035000 Sobic004G035000 Sobic001G090500--Sobic004G035000 Sobic001G090500--Sobic004G317100 Sobic002G169633 Sobic002G169633 Sobic001G090500--Sobic002G169633 Sobic002G031400 Sobic002G031400 Sobic001G090500--Sobic002G031400 Sobic001G178700--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G178700--Sobic009G010600 Sobic001G248300 Sobic001G248300 Sobic001G178700--Sobic001G248300 Sobic001G178700--Sobic001G291000 Sobic001G474600 Sobic001G474600 Sobic001G178700--Sobic001G474600 Sobic001G178700--Sobic001G146800 Sobic001G178700--Sobic010G112000 Sobic001G178700--Sobic007G172400 Sobic004G329400 Sobic004G329400 Sobic001G178700--Sobic004G329400
Octagon: transcription factors


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