Gene annotation
Transcriptome id Sobic.004G288600.1
Synonym YDA, EMB71, MAPKKK4, Sb04g032420
Functional annotation STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
UniProt C5Y1D8
Pfam PF00069
Panther DB PTHR24361 PTHR24361:SF253
NCBI CDD KOG0198; MEKK and related serine/threonine protein kinases
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G63700 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os02g44642.1 : STE_MEKK_ste11_MAP3K.10 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MaizeGDB (Corn) Zm00025a032251 , Zm00025a021440
Brachypodium KQJ84015 , KQK00715
Barley HORVU6Hr1G064150.1 , HORVU6Hr1G064150.2 , HORVU6Hr1G064150.3 , HORVU6Hr1G064150.4 , HORVU6Hr1G064150.5 , HORVU6Hr1G064150.8 , HORVU6Hr1G064150.20 , HORVU6Hr1G064150.6 , HORVU6Hr1G064150.7 , HORVU6Hr1G064150.9 , HORVU6Hr1G064150.18 , HORVU6Hr1G064150.19 , HORVU6Hr1G064150.12 , HORVU6Hr1G064150.13 , HORVU6Hr1G064150.10 , HORVU6Hr1G064150.11 , HORVU6Hr1G064150.16 , HORVU6Hr1G064150.17 , HORVU6Hr1G064150.14 , HORVU6Hr1G064150.15 , HORVU2Hr1G096350.7 , HORVU2Hr1G096350.6 , HORVU2Hr1G096350.5 , HORVU2Hr1G096350.4 , HORVU2Hr1G096350.3 , HORVU2Hr1G096350.2 , HORVU2Hr1G096350.1 , HORVU1Hr1G058600.1
Wheat TraesCS2D02G404700 , TraesCS6D02G227300 , TraesCS6D02G227300 , TraesCS6D02G227300 , TraesCS6A02G245000 , TraesCS6A02G245000 , TraesCS6A02G245000 , TraesCS2B02G425500 , TraesCS2B02G425500 , TraesCS6B02G279300
Populus -


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cDNA sequences
Sobic.004G288600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351600 expressed protein K18734: protein SMG8
2 Sobic.004G327400 zinc finger CCCH-type with G patch domain-containing protein, putative, expressed -
3 Sobic.001G237700 RNA recognition motif containing protein, putative, expressed K13091: RBM39, RNA-binding protein 39
4 Sobic.009G203000 ATP-dependent protease La, putative, expressed K11793: cereblon
5 Sobic.009G231800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@auxin response factor 15, putative, expressed K14486: K14486, auxin response factor
6 Sobic.005G111000 receptor protein kinase TMK1 precursor, putative, expressed -
7 Sobic.008G163300 AGC_AGC_other_NDRh_TRCd.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.001G121900 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
9 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
10 Sobic.001G161800 F-box/LRR domain containing protein, putative, expressed -
11 Sobic.001G362601 - -
12 Sobic.009G255800 eukaryotic translation initiation factor 5B, putative, expressed K03243: translation initiation factor 5B
13 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2
14 Sobic.010G070600 DNA binding protein, putative, expressed -
15 Sobic.002G264500 expressed protein -
16 Sobic.010G000800 PHD-finger domain containing protein, expressed -
17 Sobic.007G222800 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
18 Sobic.010G268100 pseudouridine synthase family protein, putative, expressed K15452: mitochondrial tRNA pseudouridine27/28 synthase
19 Sobic.008G033900 PHD-finger family protein, expressed -
20 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5


Gene co-expression network
sample Sobic004G288600 Sobic004G288600 Sobic004G351600 Sobic004G351600 Sobic004G288600--Sobic004G351600 Sobic004G327400 Sobic004G327400 Sobic004G288600--Sobic004G327400 Sobic001G237700 Sobic001G237700 Sobic004G288600--Sobic001G237700 Sobic009G203000 Sobic009G203000 Sobic004G288600--Sobic009G203000 Sobic009G231800 Sobic009G231800 Sobic004G288600--Sobic009G231800 Sobic005G111000 Sobic005G111000 Sobic004G288600--Sobic005G111000 Sobic008G163300 Sobic008G163300 Sobic004G288600--Sobic008G163300 Sobic001G121900 Sobic001G121900 Sobic004G288600--Sobic001G121900 Sobic002G068100 Sobic002G068100 Sobic004G288600--Sobic002G068100 Sobic009G256400 Sobic009G256400 Sobic004G351600--Sobic009G256400 Sobic007G063000 Sobic007G063000 Sobic004G351600--Sobic007G063000 Sobic003G166750 Sobic003G166750 Sobic004G351600--Sobic003G166750 Sobic002G042600 Sobic002G042600 Sobic004G351600--Sobic002G042600 Sobic003G095900 Sobic003G095900 Sobic004G351600--Sobic003G095900 Sobic004G276400 Sobic004G276400 Sobic004G351600--Sobic004G276400 Sobic002G133300 Sobic002G133300 Sobic004G351600--Sobic002G133300 Sobic009G165700 Sobic009G165700 Sobic004G351600--Sobic009G165700 Sobic001G370900 Sobic001G370900 Sobic004G351600--Sobic001G370900 Sobic004G327400--Sobic001G237700 Sobic009G209300 Sobic009G209300 Sobic004G327400--Sobic009G209300 Sobic001G423700 Sobic001G423700 Sobic004G327400--Sobic001G423700 Sobic009G191100 Sobic009G191100 Sobic004G327400--Sobic009G191100 Sobic010G255300 Sobic010G255300 Sobic004G327400--Sobic010G255300 Sobic001G161800 Sobic001G161800 Sobic004G327400--Sobic001G161800 Sobic007G050400 Sobic007G050400 Sobic004G327400--Sobic007G050400 Sobic004G182900 Sobic004G182900 Sobic004G327400--Sobic004G182900 Sobic005G063000 Sobic005G063000 Sobic004G327400--Sobic005G063000 Sobic001G237700--Sobic001G423700 Sobic007G017400 Sobic007G017400 Sobic001G237700--Sobic007G017400 Sobic005G195800 Sobic005G195800 Sobic001G237700--Sobic005G195800 Sobic001G237700--Sobic007G050400 Sobic002G425800 Sobic002G425800 Sobic001G237700--Sobic002G425800 Sobic001G237700--Sobic004G327400 Sobic002G337300 Sobic002G337300 Sobic001G237700--Sobic002G337300 Sobic004G354700 Sobic004G354700 Sobic001G237700--Sobic004G354700 Sobic002G166500 Sobic002G166500 Sobic001G237700--Sobic002G166500 Sobic002G413500 Sobic002G413500 Sobic009G203000--Sobic002G413500 Sobic002G076500 Sobic002G076500 Sobic009G203000--Sobic002G076500 Sobic005G150600 Sobic005G150600 Sobic009G203000--Sobic005G150600 Sobic003G432800 Sobic003G432800 Sobic009G203000--Sobic003G432800 Sobic009G171200 Sobic009G171200 Sobic009G203000--Sobic009G171200 Sobic007G153500 Sobic007G153500 Sobic009G203000--Sobic007G153500 Sobic004G320700 Sobic004G320700 Sobic009G203000--Sobic004G320700 Sobic010G244900 Sobic010G244900 Sobic009G203000--Sobic010G244900 Sobic006G210700 Sobic006G210700 Sobic009G203000--Sobic006G210700 Sobic005G132000 Sobic005G132000 Sobic009G231800--Sobic005G132000 Sobic009G259100 Sobic009G259100 Sobic009G231800--Sobic009G259100 Sobic003G186800 Sobic003G186800 Sobic009G231800--Sobic003G186800 Sobic007G121300 Sobic007G121300 Sobic009G231800--Sobic007G121300 Sobic001G485100 Sobic001G485100 Sobic009G231800--Sobic001G485100 Sobic001G276300 Sobic001G276300 Sobic009G231800--Sobic001G276300 Sobic004G344600 Sobic004G344600 Sobic009G231800--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic009G231800--Sobic001G331600 Sobic002G295100 Sobic002G295100 Sobic009G231800--Sobic002G295100 Sobic003G218700 Sobic003G218700 Sobic005G111000--Sobic003G218700 Sobic006G280100 Sobic006G280100 Sobic005G111000--Sobic006G280100 Sobic007G059600 Sobic007G059600 Sobic005G111000--Sobic007G059600 Sobic008G088842 Sobic008G088842 Sobic005G111000--Sobic008G088842 Sobic002G079100 Sobic002G079100 Sobic005G111000--Sobic002G079100 Sobic002G425200 Sobic002G425200 Sobic005G111000--Sobic002G425200 Sobic003G104100 Sobic003G104100 Sobic005G111000--Sobic003G104100 Sobic009G190200 Sobic009G190200 Sobic005G111000--Sobic009G190200 Sobic009G101000 Sobic009G101000 Sobic005G111000--Sobic009G101000 Sobic002G004600 Sobic002G004600 Sobic008G163300--Sobic002G004600 Sobic003G310300 Sobic003G310300 Sobic008G163300--Sobic003G310300 Sobic002G324300 Sobic002G324300 Sobic008G163300--Sobic002G324300 Sobic002G079000 Sobic002G079000 Sobic008G163300--Sobic002G079000 Sobic002G084800 Sobic002G084800 Sobic008G163300--Sobic002G084800 Sobic003G241700 Sobic003G241700 Sobic008G163300--Sobic003G241700 Sobic010G134000 Sobic010G134000 Sobic008G163300--Sobic010G134000 Sobic006G031833 Sobic006G031833 Sobic008G163300--Sobic006G031833 Sobic006G250800 Sobic006G250800 Sobic008G163300--Sobic006G250800 Sobic002G233900 Sobic002G233900 Sobic001G121900--Sobic002G233900 Sobic006G262100 Sobic006G262100 Sobic001G121900--Sobic006G262100 Sobic001G494100 Sobic001G494100 Sobic001G121900--Sobic001G494100 Sobic003G023400 Sobic003G023400 Sobic001G121900--Sobic003G023400 Sobic001G121900--Sobic005G111000 Sobic009G244700 Sobic009G244700 Sobic001G121900--Sobic009G244700 Sobic010G135300 Sobic010G135300 Sobic001G121900--Sobic010G135300 Sobic002G374400 Sobic002G374400 Sobic001G121900--Sobic002G374400 Sobic002G098500 Sobic002G098500 Sobic001G121900--Sobic002G098500 Sobic001G111600 Sobic001G111600 Sobic002G068100--Sobic001G111600 Sobic001G354600 Sobic001G354600 Sobic002G068100--Sobic001G354600 Sobic003G360400 Sobic003G360400 Sobic002G068100--Sobic003G360400 Sobic004G096400 Sobic004G096400 Sobic002G068100--Sobic004G096400 Sobic004G158400 Sobic004G158400 Sobic002G068100--Sobic004G158400 Sobic006G240100 Sobic006G240100 Sobic002G068100--Sobic006G240100 Sobic002G154000 Sobic002G154000 Sobic002G068100--Sobic002G154000 Sobic002G137200 Sobic002G137200 Sobic002G068100--Sobic002G137200 Sobic002G299700 Sobic002G299700 Sobic002G068100--Sobic002G299700
Octagon: transcription factors


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