Gene annotation
Transcriptome id Sobic.006G031300.1,Sobic.006G031300.2
Synonym Sb06g003200
Functional annotation eukaryotic aspartyl protease domain containing protein, expressed
UniProt A0A1B6PJU0 , C5YD85
Pfam PF14543
Panther DB PTHR13683 PTHR13683:SF357
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT4G35880 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os04g15790.1 : eukaryotic aspartyl protease domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011970
Brachypodium KQJ81954 , PNT60757 , PNT60759
Barley HORVU2Hr1G010520.10 , HORVU2Hr1G010520.11 , HORVU2Hr1G010520.12 , HORVU2Hr1G010520.13 , HORVU2Hr1G010520.14 , HORVU2Hr1G010520.15 , HORVU2Hr1G010520.16 , HORVU2Hr1G010520.17 , HORVU2Hr1G010520.18 , HORVU2Hr1G010520.19 , HORVU2Hr1G010520.24 , HORVU2Hr1G010520.21 , HORVU2Hr1G010520.20 , HORVU2Hr1G010520.23 , HORVU2Hr1G010520.22 , HORVU2Hr1G010520.2 , HORVU2Hr1G010520.1 , HORVU2Hr1G010520.6 , HORVU2Hr1G010520.7 , HORVU2Hr1G010520.4 , HORVU2Hr1G010520.5 , HORVU2Hr1G010520.8 , HORVU2Hr1G010520.9
Wheat TraesCS2B02G079700 , TraesCS2A02G067500 , TraesCS2D02G065800 , TraesCS2D02G065800
Populus -


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cDNA sequences
Sobic.006G031300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
2 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
3 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
4 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
5 Sobic.002G042800 expressed protein -
6 Sobic.002G211800 AT-rich interaction region, putative, expressed -
7 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
8 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
9 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
10 Sobic.001G456900 expressed protein -
11 Sobic.004G124300 tesmin/TSO1-like CXC domain containing protein, expressed -
12 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
13 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
14 Sobic.003G272700 transmembrane protein 16K, putative, expressed -
15 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
16 Sobic.010G226000 expressed protein -
17 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
18 Sobic.003G379200 wound-responsive family protein, putative, expressed -
19 Sobic.001G400500 calpain, putative, expressed -
20 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase


Gene co-expression network
sample Sobic006G031300 Sobic006G031300 Sobic004G131800 Sobic004G131800 Sobic006G031300--Sobic004G131800 Sobic001G455600 Sobic001G455600 Sobic006G031300--Sobic001G455600 Sobic001G456300 Sobic001G456300 Sobic006G031300--Sobic001G456300 Sobic009G185700 Sobic009G185700 Sobic006G031300--Sobic009G185700 Sobic002G042800 Sobic002G042800 Sobic006G031300--Sobic002G042800 Sobic002G211800 Sobic002G211800 Sobic006G031300--Sobic002G211800 Sobic004G107200 Sobic004G107200 Sobic006G031300--Sobic004G107200 Sobic006G056700 Sobic006G056700 Sobic006G031300--Sobic006G056700 Sobic006G261400 Sobic006G261400 Sobic006G031300--Sobic006G261400 Sobic003G176000 Sobic003G176000 Sobic004G131800--Sobic003G176000 Sobic004G131800--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic004G131800--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic004G131800--Sobic006G127600 Sobic010G032900 Sobic010G032900 Sobic004G131800--Sobic010G032900 Sobic002G344000 Sobic002G344000 Sobic004G131800--Sobic002G344000 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic002G294800 Sobic002G294800 Sobic004G131800--Sobic002G294800 Sobic004G140600 Sobic004G140600 Sobic001G455600--Sobic004G140600 Sobic009G132700 Sobic009G132700 Sobic001G455600--Sobic009G132700 Sobic001G455600--Sobic009G185700 Sobic004G134200 Sobic004G134200 Sobic001G455600--Sobic004G134200 Sobic010G139000 Sobic010G139000 Sobic001G455600--Sobic010G139000 Sobic006G216100 Sobic006G216100 Sobic001G455600--Sobic006G216100 Sobic001G456900 Sobic001G456900 Sobic001G455600--Sobic001G456900 Sobic003G441900 Sobic003G441900 Sobic001G455600--Sobic003G441900 Sobic008G044100 Sobic008G044100 Sobic001G455600--Sobic008G044100 Sobic005G100700 Sobic005G100700 Sobic001G456300--Sobic005G100700 Sobic003G360400 Sobic003G360400 Sobic001G456300--Sobic003G360400 Sobic001G456300--Sobic006G056700 Sobic007G183900 Sobic007G183900 Sobic001G456300--Sobic007G183900 Sobic006G118700 Sobic006G118700 Sobic001G456300--Sobic006G118700 Sobic010G112100 Sobic010G112100 Sobic001G456300--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic001G456300--Sobic001G063700 Sobic001G461400 Sobic001G461400 Sobic001G456300--Sobic001G461400 Sobic001G025000 Sobic001G025000 Sobic001G456300--Sobic001G025000 Sobic009G185700--Sobic001G455600 Sobic009G185700--Sobic002G344000 Sobic009G185700--Sobic004G134200 Sobic002G425500 Sobic002G425500 Sobic009G185700--Sobic002G425500 Sobic009G185700--Sobic003G441900 Sobic005G142800 Sobic005G142800 Sobic009G185700--Sobic005G142800 Sobic009G185700--Sobic002G211800 Sobic003G077700 Sobic003G077700 Sobic009G185700--Sobic003G077700 Sobic009G215500 Sobic009G215500 Sobic009G185700--Sobic009G215500 Sobic008G028700 Sobic008G028700 Sobic002G042800--Sobic008G028700 Sobic002G042800--Sobic001G456900 Sobic002G042800--Sobic006G216100 Sobic002G408200 Sobic002G408200 Sobic002G042800--Sobic002G408200 Sobic001G094600 Sobic001G094600 Sobic002G042800--Sobic001G094600 Sobic010G243900 Sobic010G243900 Sobic002G042800--Sobic010G243900 Sobic010G279450 Sobic010G279450 Sobic002G042800--Sobic010G279450 Sobic008G113100 Sobic008G113100 Sobic002G042800--Sobic008G113100 Sobic002G103600 Sobic002G103600 Sobic002G042800--Sobic002G103600 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic002G043100 Sobic002G043100 Sobic004G107200--Sobic002G043100 Sobic001G501800 Sobic001G501800 Sobic004G107200--Sobic001G501800 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G107200--Sobic006G269800 Sobic006G096900 Sobic006G096900 Sobic006G056700--Sobic006G096900 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic008G063300 Sobic008G063300 Sobic006G056700--Sobic008G063300 Sobic006G056700--Sobic002G170200 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic003G379200 Sobic003G379200 Sobic006G261400--Sobic003G379200 Sobic006G261400--Sobic006G127600 Sobic006G267600 Sobic006G267600 Sobic006G261400--Sobic006G267600 Sobic003G104000 Sobic003G104000 Sobic006G261400--Sobic003G104000 Sobic010G000800 Sobic010G000800 Sobic006G261400--Sobic010G000800 Sobic002G048700 Sobic002G048700 Sobic006G261400--Sobic002G048700 Sobic001G051700 Sobic001G051700 Sobic006G261400--Sobic001G051700 Sobic004G131300 Sobic004G131300 Sobic006G261400--Sobic004G131300 Sobic003G296900 Sobic003G296900 Sobic006G261400--Sobic003G296900
Octagon: transcription factors


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