Gene annotation
| Transcriptome id | Sobic.006G162200.1,Sobic.006G162200.2 |
|---|---|
| Synonym | NDH-M, Sb06g023900 |
| Functional annotation | NDH-M H PLASTOQUINONE DEHY, putative, expressed |
| UniProt | C5YD00 |
| Pfam | PF10664 |
| Panther DB | PTHR36900 PTHR36900:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016655; oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor |
Orthologs (automatic annotation)
| TAIR | AT4G37925 : subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex |
|---|---|
| RAP-DB (Rice) | LOC_Os04g45600.1 : NDH-M H PLASTOQUINONE DEHY, putative, expressed |
| MaizeGDB (Corn) | Zm00025a010406 |
| Brachypodium | KQJ83821 , KQJ83822 |
| Barley | - |
| Wheat | TraesCS2A02G387800 , TraesCS2D02G385300 , TraesCS2B02G405600 |
| Populus | - |
JBrowse
| Sobic.006G162200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G191300 | photosystem II reaction center W protein, chloroplast precursor, putative, expressed | K02721: photosystem II PsbW protein |
| 2 | Sobic.005G039600 | -(PubMedID : 26465154)@expressed protein | - |
| 3 | Sobic.003G230400 | 50S ribosomal protein L31, putative, expressed | K02909: RP-L31, large subunit ribosomal protein L31 |
| 4 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 5 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 6 | Sobic.001G520800 | expressed protein | - |
| 7 | Sobic.010G042400 | -(PubMedID : 26465154)@expressed protein | - |
| 8 | Sobic.001G417200 | ATP synthase B chain, chloroplast precursor, putative, expressed | K02109: ATPF0B, F-type H+-transporting ATPase subunit b |
| 9 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 10 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 11 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 12 | Sobic.002G233300 | Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed | - |
| 13 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 14 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 15 | Sobic.003G431900 | -(PubMedID : 26976818)@expressed protein | K07562: nonsense-mediated mRNA decay protein 3 |
| 16 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 17 | Sobic.002G370600 | - | - |
| 18 | Sobic.003G199800 | expressed protein | - |
| 19 | Sobic.003G309700 | decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 20 | Sobic.004G305800 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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