Gene annotation
Transcriptome id Sobic.007G190700.2
Synonym SRG3, Sb07g026000
Functional annotation Glycerophosphodiester phosphodiesterase (At) (PubMedID : 27208977)
glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt A0A1B6PIK1
Pfam PF03009
Panther DB PTHR22958 PTHR22958:SF12
NCBI CDD KOG2421; Predicted starch-binding protein
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT3G02040 : senescence-related gene 3
RAP-DB (Rice) LOC_Os08g42390.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005301
Brachypodium PNT68501 , KQJ99155
Barley HORVU7Hr1G054980.19 , HORVU7Hr1G054980.18 , HORVU7Hr1G054980.11 , HORVU7Hr1G054980.15 , HORVU7Hr1G054980.16 , HORVU7Hr1G054980.7 , HORVU7Hr1G054980.24 , HORVU7Hr1G054980.25 , HORVU7Hr1G054980.21 , HORVU7Hr1G054980.28 , HORVU7Hr1G054980.29
Wheat TraesCS7D02G263700 , TraesCS7A02G263000 , TraesCS7A02G263000 , TraesCS7B02G160800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G173700 SLL1 protein, putative, expressed -
2 Sobic.001G391200 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
3 Sobic.007G212100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.003G137600 CHIT10 - Chitinase family protein precursor, expressed -
5 Sobic.001G365700 OsRhmbd13 - Putative Rhomboid homologue, expressed -
6 Sobic.007G127400 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
7 Sobic.009G259200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
8 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
9 Sobic.003G380300 cytochrome c, putative, expressed K08738: cytochrome c
10 Sobic.004G232500 dnaJ homolog subfamily C member 7, putative, expressed K09527: DnaJ homolog subfamily C member 7
11 Sobic.010G105000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
12 Sobic.001G303900 CPuORF23 - conserved peptide uORF-containing transcript, expressed K01087: trehalose 6-phosphate phosphatase
13 Sobic.003G391900 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein
14 Sobic.003G335300 E2F-related protein, putative, expressed -
15 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
16 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
17 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
18 Sobic.002G228900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.007G211900 mapped into a stay green mQTL (QSTG meta2.7)(PubMedID : 24655390)@"1,2-diacylglycerol 3-beta-galactosyltransferase MGD2 (At)"(PubMedID : 27208977)@MGD2, putative, expressed K03715: 1,2-diacylglycerol 3-beta-galactosyltransferase
20 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)


Gene co-expression network
sample Sobic007G190700 Sobic007G190700 Sobic004G173700 Sobic004G173700 Sobic007G190700--Sobic004G173700 Sobic001G391200 Sobic001G391200 Sobic007G190700--Sobic001G391200 Sobic007G212100 Sobic007G212100 Sobic007G190700--Sobic007G212100 Sobic003G137600 Sobic003G137600 Sobic007G190700--Sobic003G137600 Sobic001G365700 Sobic001G365700 Sobic007G190700--Sobic001G365700 Sobic007G127400 Sobic007G127400 Sobic007G190700--Sobic007G127400 Sobic009G259200 Sobic009G259200 Sobic007G190700--Sobic009G259200 Sobic007G023400 Sobic007G023400 Sobic007G190700--Sobic007G023400 Sobic003G380300 Sobic003G380300 Sobic007G190700--Sobic003G380300 Sobic004G173700--Sobic003G137600 Sobic006G120900 Sobic006G120900 Sobic004G173700--Sobic006G120900 Sobic002G420600 Sobic002G420600 Sobic004G173700--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic004G173700--Sobic001G387200 Sobic004G173700--Sobic001G365700 Sobic003G129900 Sobic003G129900 Sobic004G173700--Sobic003G129900 Sobic004G173700--Sobic007G212100 Sobic001G303900 Sobic001G303900 Sobic004G173700--Sobic001G303900 Sobic008G018300 Sobic008G018300 Sobic004G173700--Sobic008G018300 Sobic007G171500 Sobic007G171500 Sobic001G391200--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic001G391200--Sobic004G297700 Sobic001G391200--Sobic003G380300 Sobic004G256700 Sobic004G256700 Sobic001G391200--Sobic004G256700 Sobic010G032600 Sobic010G032600 Sobic001G391200--Sobic010G032600 Sobic001G391200--Sobic001G387200 Sobic001G518500 Sobic001G518500 Sobic001G391200--Sobic001G518500 Sobic001G391200--Sobic003G129900 Sobic003G308400 Sobic003G308400 Sobic001G391200--Sobic003G308400 Sobic009G176400 Sobic009G176400 Sobic007G212100--Sobic009G176400 Sobic007G212100--Sobic004G173700 Sobic007G212100--Sobic003G137600 Sobic004G232500 Sobic004G232500 Sobic007G212100--Sobic004G232500 Sobic010G250300 Sobic010G250300 Sobic007G212100--Sobic010G250300 Sobic004G232700 Sobic004G232700 Sobic007G212100--Sobic004G232700 Sobic003G139200 Sobic003G139200 Sobic007G212100--Sobic003G139200 Sobic004G247500 Sobic004G247500 Sobic007G212100--Sobic004G247500 Sobic004G165200 Sobic004G165200 Sobic007G212100--Sobic004G165200 Sobic003G137600--Sobic004G173700 Sobic003G212000 Sobic003G212000 Sobic003G137600--Sobic003G212000 Sobic003G234500 Sobic003G234500 Sobic003G137600--Sobic003G234500 Sobic003G137600--Sobic006G120900 Sobic002G113200 Sobic002G113200 Sobic003G137600--Sobic002G113200 Sobic003G137600--Sobic001G365700 Sobic003G137600--Sobic007G212100 Sobic003G284100 Sobic003G284100 Sobic003G137600--Sobic003G284100 Sobic009G189700 Sobic009G189700 Sobic003G137600--Sobic009G189700 Sobic003G335300 Sobic003G335300 Sobic001G365700--Sobic003G335300 Sobic001G365700--Sobic004G173700 Sobic004G127000 Sobic004G127000 Sobic001G365700--Sobic004G127000 Sobic001G365700--Sobic003G137600 Sobic001G482800 Sobic001G482800 Sobic001G365700--Sobic001G482800 Sobic010G216400 Sobic010G216400 Sobic001G365700--Sobic010G216400 Sobic001G365700--Sobic003G284100 Sobic001G365700--Sobic004G232500 Sobic010G043250 Sobic010G043250 Sobic001G365700--Sobic010G043250 Sobic002G082800 Sobic002G082800 Sobic007G127400--Sobic002G082800 Sobic006G096100 Sobic006G096100 Sobic007G127400--Sobic006G096100 Sobic007G127400--Sobic010G250300 Sobic007G127400--Sobic007G212100 Sobic004G251600 Sobic004G251600 Sobic007G127400--Sobic004G251600 Sobic007G127400--Sobic004G232700 Sobic008G023300 Sobic008G023300 Sobic007G127400--Sobic008G023300 Sobic004G261800 Sobic004G261800 Sobic007G127400--Sobic004G261800 Sobic007G127400--Sobic004G232500 Sobic001G457000 Sobic001G457000 Sobic009G259200--Sobic001G457000 Sobic009G224400 Sobic009G224400 Sobic009G259200--Sobic009G224400 Sobic003G260600 Sobic003G260600 Sobic009G259200--Sobic003G260600 Sobic007G119600 Sobic007G119600 Sobic009G259200--Sobic007G119600 Sobic003G028200 Sobic003G028200 Sobic009G259200--Sobic003G028200 Sobic002G255400 Sobic002G255400 Sobic009G259200--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic009G259200--Sobic003G201500 Sobic009G259200--Sobic004G173700 Sobic003G089100 Sobic003G089100 Sobic009G259200--Sobic003G089100 Sobic002G395000 Sobic002G395000 Sobic007G023400--Sobic002G395000 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G023400--Sobic007G171500 Sobic007G023400--Sobic004G297700 Sobic003G135600 Sobic003G135600 Sobic007G023400--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic001G073600 Sobic001G073600 Sobic007G023400--Sobic001G073600 Sobic003G380300--Sobic006G120900 Sobic001G408400 Sobic001G408400 Sobic003G380300--Sobic001G408400 Sobic003G380300--Sobic001G387200 Sobic010G105000 Sobic010G105000 Sobic003G380300--Sobic010G105000 Sobic003G380300--Sobic004G173700 Sobic003G380300--Sobic003G234500 Sobic003G380300--Sobic003G137600 Sobic003G380300--Sobic003G129900 Sobic002G259700 Sobic002G259700 Sobic003G380300--Sobic002G259700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.