Gene annotation
Transcriptome id Sobic.009G057900.1,Sobic.009G057900.2,Sobic.009G057900.3
Synonym
Functional annotation kelch repeat-containing protein, putative, expressed
UniProt A0A1B6P6S5 , A0A1B6P6S2
Pfam PF10539 PF01344
Panther DB PTHR24412 PTHR24412:SF228
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G01660 : -
RAP-DB (Rice) LOC_Os01g07140.2 : kelch repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042909 , Zm00025a042916
Brachypodium PNT71727 , PNT71726 , KQK07321
Barley HORVU1Hr1G024460.19 , HORVU1Hr1G024460.18 , HORVU1Hr1G024460.13 , HORVU1Hr1G024460.12 , HORVU1Hr1G024460.11 , HORVU1Hr1G024460.10 , HORVU1Hr1G024460.17 , HORVU1Hr1G024460.16 , HORVU1Hr1G024460.15 , HORVU1Hr1G024460.14 , HORVU1Hr1G024460.9 , HORVU1Hr1G024460.8 , HORVU1Hr1G024460.2 , HORVU1Hr1G024460.1 , HORVU1Hr1G024460.7 , HORVU1Hr1G024460.5 , HORVU1Hr1G024460.4 , HORVU1Hr1G024460.3 , HORVU1Hr1G024460.6 , HORVU3Hr1G017930.24 , HORVU3Hr1G017930.21 , HORVU3Hr1G017930.22 , HORVU3Hr1G017930.23 , HORVU1Hr1G024460.22 , HORVU1Hr1G024460.20 , HORVU1Hr1G024460.21 , HORVU3Hr1G017930.7 , HORVU3Hr1G017930.6 , HORVU3Hr1G017930.1 , HORVU3Hr1G017930.3 , HORVU3Hr1G017930.2 , HORVU3Hr1G017930.8 , HORVU3Hr1G017930.11 , HORVU3Hr1G017930.10 , HORVU3Hr1G017930.12 , HORVU3Hr1G017930.14 , HORVU3Hr1G017930.17 , HORVU3Hr1G017930.16 , HORVU3Hr1G017930.19 , HORVU3Hr1G017930.18
Wheat TraesCS1D02G112800 , TraesCS3B02G115100 , TraesCS1B02G131600 , TraesCS3A02G098900 , TraesCS3A02G098900 , TraesCS3D02G099300 , TraesCS1A02G111300
Populus -


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cDNA sequences
Sobic.009G057900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000300 expressed protein -
2 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
3 Sobic.002G031700 - -
4 Sobic.009G193500 AGAP007115-PA, putative, expressed -
5 Sobic.004G262700 - -
6 Sobic.004G213800 expressed protein -
7 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
8 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
9 Sobic.004G351800 PPR repeat containing protein, expressed -
10 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
11 Sobic.010G136200 oxidoreductase/ transition metal ion binding protein, putative, expressed -
12 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
13 Sobic.007G173500 growth regulator related protein, putative, expressed -
14 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
15 Sobic.003G362200 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
16 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.002G202000 double-stranded RNA binding motif containing protein, expressed -
18 Sobic.003G188300 expressed protein -
19 Sobic.002G405200 AMP deaminase, putative, expressed K01488: add, adenosine deaminase
20 Sobic.001G503900 MT-A70 domain containing protein, expressed -


Gene co-expression network
sample Sobic009G057900 Sobic009G057900 Sobic007G000300 Sobic007G000300 Sobic009G057900--Sobic007G000300 Sobic001G275300 Sobic001G275300 Sobic009G057900--Sobic001G275300 Sobic002G031700 Sobic002G031700 Sobic009G057900--Sobic002G031700 Sobic009G193500 Sobic009G193500 Sobic009G057900--Sobic009G193500 Sobic004G262700 Sobic004G262700 Sobic009G057900--Sobic004G262700 Sobic004G213800 Sobic004G213800 Sobic009G057900--Sobic004G213800 Sobic002G418600 Sobic002G418600 Sobic009G057900--Sobic002G418600 Sobic004G025800 Sobic004G025800 Sobic009G057900--Sobic004G025800 Sobic004G351800 Sobic004G351800 Sobic009G057900--Sobic004G351800 Sobic007G000300--Sobic001G275300 Sobic003G241700 Sobic003G241700 Sobic007G000300--Sobic003G241700 Sobic001G393900 Sobic001G393900 Sobic007G000300--Sobic001G393900 Sobic006G088200 Sobic006G088200 Sobic007G000300--Sobic006G088200 Sobic003G062300 Sobic003G062300 Sobic007G000300--Sobic003G062300 Sobic003G016900 Sobic003G016900 Sobic007G000300--Sobic003G016900 Sobic001G261900 Sobic001G261900 Sobic007G000300--Sobic001G261900 Sobic007G212300 Sobic007G212300 Sobic007G000300--Sobic007G212300 Sobic007G173500 Sobic007G173500 Sobic007G000300--Sobic007G173500 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic005G167700 Sobic005G167700 Sobic001G275300--Sobic005G167700 Sobic007G075800 Sobic007G075800 Sobic002G031700--Sobic007G075800 Sobic002G155000 Sobic002G155000 Sobic002G031700--Sobic002G155000 Sobic010G100800 Sobic010G100800 Sobic002G031700--Sobic010G100800 Sobic008G165900 Sobic008G165900 Sobic002G031700--Sobic008G165900 Sobic003G134000 Sobic003G134000 Sobic002G031700--Sobic003G134000 Sobic001G501300 Sobic001G501300 Sobic002G031700--Sobic001G501300 Sobic007G097400 Sobic007G097400 Sobic002G031700--Sobic007G097400 Sobic003G193200 Sobic003G193200 Sobic002G031700--Sobic003G193200 Sobic001G207200 Sobic001G207200 Sobic002G031700--Sobic001G207200 Sobic004G026500 Sobic004G026500 Sobic009G193500--Sobic004G026500 Sobic002G339300 Sobic002G339300 Sobic009G193500--Sobic002G339300 Sobic002G276100 Sobic002G276100 Sobic009G193500--Sobic002G276100 Sobic001G124100 Sobic001G124100 Sobic009G193500--Sobic001G124100 Sobic007G103100 Sobic007G103100 Sobic009G193500--Sobic007G103100 Sobic002G168500 Sobic002G168500 Sobic009G193500--Sobic002G168500 Sobic008G172300 Sobic008G172300 Sobic009G193500--Sobic008G172300 Sobic001G219700 Sobic001G219700 Sobic009G193500--Sobic001G219700 Sobic006G186600 Sobic006G186600 Sobic009G193500--Sobic006G186600 Sobic004G262700--Sobic002G339300 Sobic001G396000 Sobic001G396000 Sobic004G262700--Sobic001G396000 Sobic004G262700--Sobic001G501300 Sobic005G026000 Sobic005G026000 Sobic004G262700--Sobic005G026000 Sobic004G262700--Sobic004G026500 Sobic004G262700--Sobic009G193500 Sobic004G262700--Sobic001G124100 Sobic004G262700--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic004G262700--Sobic002G345700 Sobic004G213800--Sobic003G241700 Sobic001G151100 Sobic001G151100 Sobic004G213800--Sobic001G151100 Sobic010G244900 Sobic010G244900 Sobic004G213800--Sobic010G244900 Sobic009G228000 Sobic009G228000 Sobic004G213800--Sobic009G228000 Sobic003G296900 Sobic003G296900 Sobic004G213800--Sobic003G296900 Sobic003G043000 Sobic003G043000 Sobic004G213800--Sobic003G043000 Sobic004G213800--Sobic005G167700 Sobic004G213800--Sobic001G275300 Sobic004G213800--Sobic007G000300 Sobic002G181000 Sobic002G181000 Sobic002G418600--Sobic002G181000 Sobic002G073200 Sobic002G073200 Sobic002G418600--Sobic002G073200 Sobic006G233700 Sobic006G233700 Sobic002G418600--Sobic006G233700 Sobic005G142800 Sobic005G142800 Sobic002G418600--Sobic005G142800 Sobic004G333400 Sobic004G333400 Sobic002G418600--Sobic004G333400 Sobic004G165000 Sobic004G165000 Sobic002G418600--Sobic004G165000 Sobic001G500600 Sobic001G500600 Sobic002G418600--Sobic001G500600 Sobic003G334100 Sobic003G334100 Sobic002G418600--Sobic003G334100 Sobic009G014100 Sobic009G014100 Sobic002G418600--Sobic009G014100 Sobic003G391400 Sobic003G391400 Sobic004G025800--Sobic003G391400 Sobic004G025800--Sobic007G075800 Sobic003G033100 Sobic003G033100 Sobic004G025800--Sobic003G033100 Sobic004G030800 Sobic004G030800 Sobic004G025800--Sobic004G030800 Sobic010G051700 Sobic010G051700 Sobic004G025800--Sobic010G051700 Sobic001G172700 Sobic001G172700 Sobic004G025800--Sobic001G172700 Sobic003G101700 Sobic003G101700 Sobic004G025800--Sobic003G101700 Sobic004G025800--Sobic002G418600 Sobic004G025800--Sobic005G142800 Sobic001G417500 Sobic001G417500 Sobic004G351800--Sobic001G417500 Sobic008G017100 Sobic008G017100 Sobic004G351800--Sobic008G017100 Sobic004G351800--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G351800--Sobic006G269800 Sobic004G107200 Sobic004G107200 Sobic004G351800--Sobic004G107200 Sobic002G052400 Sobic002G052400 Sobic004G351800--Sobic002G052400 Sobic001G326300 Sobic001G326300 Sobic004G351800--Sobic001G326300 Sobic004G351800--Sobic007G173500 Sobic006G128400 Sobic006G128400 Sobic004G351800--Sobic006G128400
Octagon: transcription factors


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