Gene annotation
Transcriptome id Sobic.010G262800.1,Sobic.010G262800.2
Synonym Sb10g029900
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5Z1T0
Pfam PF00400
Panther DB PTHR18359
NCBI CDD -
KEGG Orthology K14553; U3 small nucleolar RNA-associated protein 18
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14050 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g41190.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018469
Brachypodium KQK05209
Barley HORVU5Hr1G105970.3 , HORVU2Hr1G032720.1 , HORVU2Hr1G032720.2 , HORVU2Hr1G032720.3 , HORVU2Hr1G032720.4 , HORVU2Hr1G032720.5 , HORVU2Hr1G032720.6 , HORVU2Hr1G032720.7 , HORVU2Hr1G032720.8 , HORVU5Hr1G075320.1 , HORVU5Hr1G105970.7 , HORVU5Hr1G105970.6 , HORVU5Hr1G105970.5 , HORVU5Hr1G105970.4 , HORVU5Hr1G105970.2 , HORVU5Hr1G105970.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G262800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G370500 expressed protein K14851: RRP17, ribosomal RNA-processing protein 17
2 Sobic.003G304700 AGAP003732-PA, putative, expressed -
3 Sobic.002G300300 rRNA-processing protein EBP2, putative, expressed K14823: EBP2, rRNA-processing protein EBP2
4 Sobic.008G117100 expressed protein -
5 Sobic.001G466600 expressed protein -
6 Sobic.004G288100 HSPC171 protein, putative, expressed -
7 Sobic.009G228500 60S ribosomal protein-related, putative, expressed K14775: UTP30, ribosome biogenesis protein UTP30
8 Sobic.006G095400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K14826: FK506-binding nuclear protein
9 Sobic.002G084500 expressed protein -
10 Sobic.001G465300 splicing factor, putative, expressed -
11 Sobic.002G312800 WD domain, G-beta repeat domain containing protein, expressed K14841: NSA1, ribosome biogenesis protein NSA1
12 Sobic.001G322900 HIT zinc finger domain containing protein, expressed -
13 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
14 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
15 Sobic.003G320200 pentatricopeptide containing protein, putative, expressed -
16 Sobic.002G329700 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
17 Sobic.001G408900 OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed -
18 Sobic.002G243500 similar to Heat shock protein 81-2(PubMedID : 29862293)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
19 Sobic.004G069500 expressed protein -
20 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5


Gene co-expression network
sample Sobic010G262800 Sobic010G262800 Sobic001G370500 Sobic001G370500 Sobic010G262800--Sobic001G370500 Sobic003G304700 Sobic003G304700 Sobic010G262800--Sobic003G304700 Sobic002G300300 Sobic002G300300 Sobic010G262800--Sobic002G300300 Sobic008G117100 Sobic008G117100 Sobic010G262800--Sobic008G117100 Sobic001G466600 Sobic001G466600 Sobic010G262800--Sobic001G466600 Sobic004G288100 Sobic004G288100 Sobic010G262800--Sobic004G288100 Sobic009G228500 Sobic009G228500 Sobic010G262800--Sobic009G228500 Sobic006G095400 Sobic006G095400 Sobic010G262800--Sobic006G095400 Sobic002G084500 Sobic002G084500 Sobic010G262800--Sobic002G084500 Sobic004G068200 Sobic004G068200 Sobic001G370500--Sobic004G068200 Sobic001G370500--Sobic004G288100 Sobic001G370500--Sobic010G262800 Sobic001G370500--Sobic001G466600 Sobic001G429800 Sobic001G429800 Sobic001G370500--Sobic001G429800 Sobic001G453800 Sobic001G453800 Sobic001G370500--Sobic001G453800 Sobic002G088100 Sobic002G088100 Sobic001G370500--Sobic002G088100 Sobic008G088812 Sobic008G088812 Sobic001G370500--Sobic008G088812 Sobic002G312800 Sobic002G312800 Sobic001G370500--Sobic002G312800 Sobic003G304700--Sobic010G262800 Sobic004G352200 Sobic004G352200 Sobic003G304700--Sobic004G352200 Sobic003G304700--Sobic009G228500 Sobic003G304700--Sobic008G117100 Sobic003G304700--Sobic004G288100 Sobic001G465300 Sobic001G465300 Sobic003G304700--Sobic001G465300 Sobic002G419100 Sobic002G419100 Sobic003G304700--Sobic002G419100 Sobic003G304700--Sobic001G370500 Sobic003G304700--Sobic002G088100 Sobic002G300300--Sobic002G419100 Sobic002G300300--Sobic002G084500 Sobic001G021300 Sobic001G021300 Sobic002G300300--Sobic001G021300 Sobic004G020000 Sobic004G020000 Sobic002G300300--Sobic004G020000 Sobic005G003800 Sobic005G003800 Sobic002G300300--Sobic005G003800 Sobic009G213500 Sobic009G213500 Sobic002G300300--Sobic009G213500 Sobic004G216400 Sobic004G216400 Sobic002G300300--Sobic004G216400 Sobic002G300300--Sobic004G352200 Sobic004G061800 Sobic004G061800 Sobic002G300300--Sobic004G061800 Sobic008G117100--Sobic003G304700 Sobic004G080400 Sobic004G080400 Sobic008G117100--Sobic004G080400 Sobic002G003000 Sobic002G003000 Sobic008G117100--Sobic002G003000 Sobic002G325400 Sobic002G325400 Sobic008G117100--Sobic002G325400 Sobic008G117100--Sobic004G288100 Sobic008G117100--Sobic010G262800 Sobic002G005700 Sobic002G005700 Sobic008G117100--Sobic002G005700 Sobic005G121100 Sobic005G121100 Sobic008G117100--Sobic005G121100 Sobic003G022800 Sobic003G022800 Sobic008G117100--Sobic003G022800 Sobic001G466600--Sobic002G312800 Sobic010G241600 Sobic010G241600 Sobic001G466600--Sobic010G241600 Sobic001G466600--Sobic006G095400 Sobic001G299800 Sobic001G299800 Sobic001G466600--Sobic001G299800 Sobic002G046300 Sobic002G046300 Sobic001G466600--Sobic002G046300 Sobic002G329700 Sobic002G329700 Sobic001G466600--Sobic002G329700 Sobic001G152360 Sobic001G152360 Sobic001G466600--Sobic001G152360 Sobic003G089200 Sobic003G089200 Sobic001G466600--Sobic003G089200 Sobic009G228900 Sobic009G228900 Sobic001G466600--Sobic009G228900 Sobic002G083800 Sobic002G083800 Sobic004G288100--Sobic002G083800 Sobic004G288100--Sobic002G329700 Sobic002G129200 Sobic002G129200 Sobic004G288100--Sobic002G129200 Sobic001G052900 Sobic001G052900 Sobic004G288100--Sobic001G052900 Sobic004G288100--Sobic001G370500 Sobic010G088600 Sobic010G088600 Sobic004G288100--Sobic010G088600 Sobic001G498400 Sobic001G498400 Sobic004G288100--Sobic001G498400 Sobic004G288100--Sobic002G003000 Sobic002G278600 Sobic002G278600 Sobic004G288100--Sobic002G278600 Sobic007G137350 Sobic007G137350 Sobic009G228500--Sobic007G137350 Sobic009G228500--Sobic006G095400 Sobic006G135000 Sobic006G135000 Sobic009G228500--Sobic006G135000 Sobic007G108100 Sobic007G108100 Sobic009G228500--Sobic007G108100 Sobic001G493400 Sobic001G493400 Sobic009G228500--Sobic001G493400 Sobic004G173100 Sobic004G173100 Sobic009G228500--Sobic004G173100 Sobic004G190600 Sobic004G190600 Sobic009G228500--Sobic004G190600 Sobic010G038800 Sobic010G038800 Sobic009G228500--Sobic010G038800 Sobic004G002500 Sobic004G002500 Sobic009G228500--Sobic004G002500 Sobic001G173800 Sobic001G173800 Sobic006G095400--Sobic001G173800 Sobic006G095400--Sobic009G228500 Sobic006G095400--Sobic002G312800 Sobic002G300500 Sobic002G300500 Sobic006G095400--Sobic002G300500 Sobic006G143200 Sobic006G143200 Sobic006G095400--Sobic006G143200 Sobic009G235200 Sobic009G235200 Sobic006G095400--Sobic009G235200 Sobic001G206500 Sobic001G206500 Sobic006G095400--Sobic001G206500 Sobic008G163500 Sobic008G163500 Sobic006G095400--Sobic008G163500 Sobic006G095400--Sobic001G466600 Sobic001G408900 Sobic001G408900 Sobic002G084500--Sobic001G408900 Sobic001G433700 Sobic001G433700 Sobic002G084500--Sobic001G433700 Sobic001G331900 Sobic001G331900 Sobic002G084500--Sobic001G331900 Sobic004G284500 Sobic004G284500 Sobic002G084500--Sobic004G284500 Sobic002G084500--Sobic002G419100 Sobic002G153500 Sobic002G153500 Sobic002G084500--Sobic002G153500 Sobic006G141500 Sobic006G141500 Sobic002G084500--Sobic006G141500 Sobic008G189300 Sobic008G189300 Sobic002G084500--Sobic008G189300 Sobic009G146100 Sobic009G146100 Sobic002G084500--Sobic009G146100
Octagon: transcription factors


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